Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03400 ATGGATGGAGAAATTCCCAAGTCTGATGACATATTTCTCTTGCAATTAAAACTCCCCTTTCTCTGCTATCTGCAGTCATCTGTCCTCCTCTCCAGTGACTTTTCTGGTCTGCATTTCCAATCCAAATTACCGTTGCATGAGGGTGTGTTAGATATAAATCCATTCATGAGCCATCACCTAATAGAATGGCAGGCTGAAGCCTATGCTACAAAAGTTTTGGATCCAGCGTTCCAGGGAGTTGGTCAAAAAGTAGGGACTGAAATATGGAGGATTGAGAATTTTCAACCAGTTCCATTGCCCAGATCTGAATATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAGACAACACAAGGCAAAGGAGGGGCTTATTTTTATGATATTCACTTCTGGATTGGAAAGGACACAAGTCAGGATGAAGCTGGAACAGCAGCCATTAAAACTGTTGAACTTGATGCGTCTCTTGGAGGGCGTGCAGTGCAACACAGGGAAATTCAAGGGCATGAATCTGACAAGTTCTTGTCATATTTTAAGCCATGTATAATACCATTAGAGGGGGGTATCGCATCTGGATTTAAAAAACCTGAAGAAGAGGAGTTTGAAACGCGTTTGTATGTATGCAGAGGAAAACGAGTTGTCAGAATAAAACAGGTCCCTTTCGCACGGTCTTCGCTGAATCATGATGATGTGTTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCTAACTCCAATATCCAGGAAAGAGCCAAGGCTCTGGAAGTTATTCAGTTGTTGAAGGAAAAGTATCATGAGGGCAAATGCGATGTTGCAATTGTAGATGATGGCAAGCTAGATACTGAGTCAGACTCAGGTGAATTTTGGGTTCTATTTGGTGGTTTTGCGCCCATTGGGAAGAAGGTAATTGGTGAGGATGATATTGTTCCAGAGACCATTCCTGCCCAACTTTATAGTATTGCTGACGGCGAGGTCAAGCCTGTGGAAGGGGAACTTTCAAAATCACTGTTGGAGAACTACAAATGCTATCTATTGGACTGTGGTGCTGAGGTATTTGTCTGGGTTGGCCGGGTAACACAAGTTGAAGAAAGAAAAGCAGCATGTCAAACAGCTGAGGAGTTTATCGCAAGTCAAAAAAGGCCAAAATCTACAAGGATTACCAGAATTATTCAAGGTTATGAAACACATTCATTTAAGTCCAATTTTGATTCTTGGCCATCAGGGTCTGCTACTACCAGTTCTGATGAAGGAAGAGGAAAAGTTGCAGCTTTGCTGAAGCAACAAGGTATGGGTGTGAAAGGGGCGGCAAAAAGCACCCCAGTTGTGGAGGAAATTCCACCTTTGCTTGAAGGAGGTGGAAAGATGGAGGTATGGCAAATCAATGGAAGTGCTAAGACTCCATTACCTAAGGAGGATATCGGCAAATTTTACAGTGGAGATTGTTACATAGTACTGTACACTTATCACTCTAGCGAGAGGAAGGAAGACTACTACTTGTGCAGTTGGTTTGGAAAAGACAGCATTGAGGAGGACCAAAGGATGGCTACTCGATTGGCTAATACAATGTTCAACTCATTAAAGGGCAGACCTGTTCAGGGTCGCATATTTGATGGTAAAGAGCCTCCTCAGTTTATTGCTCTTTTCCAACCAATGGTGGTCCTCAAGGGAGGCTTGAGCTCTGGGTACAAAAAAATTATAGCAGAAAAAGGCTTGCCAGATGAGACATACACAGCAGAAAGTATTGCACTTATTCGAATTTCGGGAACATCCGCTCATAATAATAAAGTGGTCCAAGTAGATGCAGTTGCGGCATCTTTGAATTCTACCGAGTGTTTTGTTTTGCAATCTGGCTCAGCTGTTTTTACTTGGCATGGGAATCAATGTTCCCTTGAGCAGCAGCAGCTTGCAGCAAAAGTTACTGAGTTTTTAAAGCCAGGAGTTTCTCTAAAGCTTGCTAAAGAAGGAACAGAAACCTCAGCTTTCTGGTTTGCAGTTGGGGGGAAACAAAGTTACAGCAGCAAAAAAGTCACCAATGATATTGTCCGAGACGCACATTTGTTCACTTTCTCTTTCAACAGAGGAAAGTTACAGGTAGAGGAGGTTTACAACTTTTCCCAAGATGATTTGTTAACAGAGGATATCCTCATACTTGACACCCACGCCGAAGTTTTTGTTTGGATTGGTCAGTGTGTGGATCCAAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAGAAATACATAGATAAGGCTGCATCTCTGGATGGACTATCTCCTCAAGTTCCACTATATAAAGTAACTGAAGGGAATGAACCGTGCTTTTTCACCACATACTTTTCTTGGGATTATGCAAAAGCTATGGTTTCAGGGAACTCATTCCAGAAAAAGGTGACATTACTCTTTGGGATTGGCCATGCTGTAGAGGAAAAGTCTAATGGGTCAAGTCAAGGGGGACCAAGACAAAGAGCAGAAGCTTTGGCTGCCTTAAATAGTGCATTCAAATCATCTCCTGAGGCAGCGTCTAGTGCGGATAAGTTAAATGGGTTAAATCAAGGAGGACCAAGACAAAGGGCTGAAGCCTTAGCAGCCTTAAACTCTGCATTTAATTCATCGTCTGGAGCCAAAGTCTATATACCTAGGTTATCTGGAAGAAGTCAAGGATCACAAAGAGCAGCAGCAGTAGCTGCTCTTTCTTCAGTTCTTACTGCTGAAAAGAAGAGAACTTCACCTGAAACTTCTCCTGTGGCAAGCAGTAGTCCTGTGGTGGAAAATAGCAACTTTGGTGAGAAACATAGCTCAATTCCGGATACCAAAAATGAGAGTGCCCCTTCTGAAACTGATGTTGTTGAAGAAGTTGCTGCTGAAGTCAAGGAGACTGAAGAACTTGCCCCTAAAACTGGCACAAATGGGGATTCAGAACCAAAACAAGAAAAAGTGGAGGATGGAGGAAATGTCAATGAAAATAATCAAAATGTCTTCAGTTATGAGCAACTAAAGACTAAATCTGGTAGTGTTGTGTCTGGGATTGATCTTAAACGGAGGGAGGCGTATCTGTCAGACAAAGAGTTTGAAACTGTATTTGGAATGAGCAAAGAGGCATTCACAAAGTTGCCAAGATGGAAGCAAGACATGCTGAAAAGGAAAGTGGATCTGTTCTAG 3168 0.4223 MDGEIPKSDDIFLLQLKLPFLCYLQSSVLLSSDFSGLHFQSKLPLHEGVLDINPFMSHHLIEWQAEAYATKVLDPAFQGVGQKVGTEIWRIENFQPVPLPRSEYGKFYMGDSYIILQTTQGKGGAYFYDIHFWIGKDTSQDEAGTAAIKTVELDASLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGIASGFKKPEEEEFETRLYVCRGKRVVRIKQVPFARSSLNHDDVFILDTQNKIYQFNGANSNIQERAKALEVIQLLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVIGEDDIVPETIPAQLYSIADGEVKPVEGELSKSLLENYKCYLLDCGAEVFVWVGRVTQVEERKAACQTAEEFIASQKRPKSTRITRIIQGYETHSFKSNFDSWPSGSATTSSDEGRGKVAALLKQQGMGVKGAAKSTPVVEEIPPLLEGGGKMEVWQINGSAKTPLPKEDIGKFYSGDCYIVLYTYHSSERKEDYYLCSWFGKDSIEEDQRMATRLANTMFNSLKGRPVQGRIFDGKEPPQFIALFQPMVVLKGGLSSGYKKIIAEKGLPDETYTAESIALIRISGTSAHNNKVVQVDAVAASLNSTECFVLQSGSAVFTWHGNQCSLEQQQLAAKVTEFLKPGVSLKLAKEGTETSAFWFAVGGKQSYSSKKVTNDIVRDAHLFTFSFNRGKLQVEEVYNFSQDDLLTEDILILDTHAEVFVWIGQCVDPKEKQNAFEIAQKYIDKAASLDGLSPQVPLYKVTEGNEPCFFTTYFSWDYAKAMVSGNSFQKKVTLLFGIGHAVEEKSNGSSQGGPRQRAEALAALNSAFKSSPEAASSADKLNGLNQGGPRQRAEALAALNSAFNSSSGAKVYIPRLSGRSQGSQRAAAVAALSSVLTAEKKRTSPETSPVASSSPVVENSNFGEKHSSIPDTKNESAPSETDVVEEVAAEVKETEELAPKTGTNGDSEPKQEKVEDGGNVNENNQNVFSYEQLKTKSGSVVSGIDLKRREAYLSDKEFETVFGMSKEAFTKLPRWKQDMLKRKVDLF 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03400 1055 FunFam Gelsolin 71 196 - -
Spst1g03400 1055 FunFam Gelsolin 584 678 - -
Spst1g03400 1055 Gene3D Severin 453 587 IPR029006 -
Spst1g03400 1055 CDD gelsolin_S6_like 689 785 - -
Spst1g03400 1055 Gene3D Severin 588 678 IPR029006 -
Spst1g03400 1055 Gene3D Severin 313 423 IPR029006 -
Spst1g03400 1055 MobiDBLite consensus disorder prediction 905 945 - -
Spst1g03400 1055 SUPERFAMILY VHP, Villin headpiece domain 982 1055 IPR036886 GO:0003779|GO:0007010
Spst1g03400 1055 Pfam Gelsolin repeat 597 648 IPR007123 -
Spst1g03400 1055 Pfam Gelsolin repeat 329 402 IPR007123 -
Spst1g03400 1055 Pfam Gelsolin repeat 470 549 IPR007123 -
Spst1g03400 1055 Pfam Gelsolin repeat 703 778 IPR007123 -
Spst1g03400 1055 Pfam Gelsolin repeat 94 176 IPR007123 -
Spst1g03400 1055 Pfam Gelsolin repeat 215 282 IPR007123 -
Spst1g03400 1055 CDD gelsolin_S1_like 77 189 - -
Spst1g03400 1055 ProSiteProfiles Headpiece (HP) domain profile. 990 1055 IPR003128 GO:0003779|GO:0007010
Spst1g03400 1055 PANTHER VILLIN 70 1045 IPR007122 GO:0051015
Spst1g03400 1055 CDD gelsolin_S3_like 319 408 - -
Spst1g03400 1055 Gene3D Severin 70 197 IPR029006 -
Spst1g03400 1055 CDD gelsolin_S4_like 451 552 - -
Spst1g03400 1055 SUPERFAMILY Actin depolymerizing proteins 288 410 - -
Spst1g03400 1055 CDD gelsolin_S5_like 584 674 - -
Spst1g03400 1055 FunFam Villin-like 1 679 800 - -
Spst1g03400 1055 Gene3D Severin 198 310 IPR029006 -
Spst1g03400 1055 SUPERFAMILY Actin depolymerizing proteins 447 594 - -
Spst1g03400 1055 CDD gelsolin_S2_like 204 297 - -
Spst1g03400 1055 MobiDBLite consensus disorder prediction 905 992 - -
Spst1g03400 1055 PRINTS Gelsolin family signature 658 677 IPR007122 GO:0051015
Spst1g03400 1055 PRINTS Gelsolin family signature 476 492 IPR007122 GO:0051015
Spst1g03400 1055 PRINTS Gelsolin family signature 535 555 IPR007122 GO:0051015
Spst1g03400 1055 PRINTS Gelsolin family signature 388 409 IPR007122 GO:0051015
Spst1g03400 1055 PRINTS Gelsolin family signature 710 732 IPR007122 GO:0051015
Spst1g03400 1055 PRINTS Gelsolin family signature 598 618 IPR007122 GO:0051015
Spst1g03400 1055 PRINTS Gelsolin family signature 739 758 IPR007122 GO:0051015
Spst1g03400 1055 PRINTS Gelsolin family signature 502 520 IPR007122 GO:0051015
Spst1g03400 1055 MobiDBLite consensus disorder prediction 953 967 - -
Spst1g03400 1055 SMART VILL_6 84 182 IPR007122 GO:0051015
Spst1g03400 1055 SMART VILL_6 583 672 IPR007122 GO:0051015
Spst1g03400 1055 SMART VILL_6 689 784 IPR007122 GO:0051015
Spst1g03400 1055 SMART VILL_6 204 299 IPR007122 GO:0051015
Spst1g03400 1055 SMART VILL_6 316 409 IPR007122 GO:0051015
Spst1g03400 1055 SMART VILL_6 457 555 IPR007122 GO:0051015
Spst1g03400 1055 SUPERFAMILY Actin depolymerizing proteins 575 679 - -
Spst1g03400 1055 Pfam Villin headpiece domain 1020 1055 IPR003128 GO:0003779|GO:0007010
Spst1g03400 1055 SUPERFAMILY Actin depolymerizing proteins 194 302 - -
Spst1g03400 1055 SMART VHP_1 1020 1055 IPR003128 GO:0003779|GO:0007010
Spst1g03400 1055 FunFam Villin-like 1 197 312 - -
Spst1g03400 1055 SUPERFAMILY Actin depolymerizing proteins 661 783 - -
Spst1g03400 1055 Gene3D Severin 679 799 IPR029006 -
Spst1g03400 1055 Gene3D Villin headpiece domain 979 1055 IPR036886 GO:0003779|GO:0007010
Spst1g03400 1055 SUPERFAMILY Actin depolymerizing proteins 74 212 - -
Spst1g03400 1055 FunFam Villin-4 313 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03400 Spst-Chr1 42621667 42631646 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03400 - - pvu:PHAVU_001G131700g 1830.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03400 1 42621667 42631646 Spst7g00331 7 2593629 2611452 PCT