Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03306 ATGAAAAGTAAAGAACTAGAAAACGATATTGAGAGAAACATGTTGCCTACTATTGTTGAAATGTGCTCACTGAAGTATTATGCTCTGTTTTTTAATAATACATTTTTTGATCTGAGGAGCACATGCATTGTGTTCATTCTAATTCCGTGTGCGTTTAGAAACTACCGAGGTTGTGTGAAGATGGGGGCTGGTGGCCGAACCTCTGTTCCTCCTGCCAACAGGAAACCAGAGGCCGATCCTCTGAAGCGGGTGCCATTTGAAAAACCTCCTTTTAGTCTCAGCCAGATAAAGAAGGCCATCCCACCACACTGTTTCCAGCGCTCTGTTCTCCGCTCATTCTCCTATGTCGTTTATGACCTCACCATAGCCTTCTGCCTCTATTATGTTGCCACCCGTTACTTCCACCTCCTTCCCCATCCACTCTCTTTCCTTGCATGGCCAATCTACTGGGCTGTCCAAGGTTGTATCCTCACTGGCCTTTGGGTCATTGCCCACGAGTGTGGCCACCATGCATTCAGTGACTACCAGCTGCTTGATGATATTGTTGGCCTTGTTCTCCATTCTGGTCTCCTAGTCCCGTACTTTTCATGGAAATACAGCCATCGCCGTCATCACTCCAACACCGGTTCTCTTGAGCGGGATGAAGTATTTGTGCCAAAGCAAAAGTCTGCTATGCAGTGGTTCTCTAAATACCTTAACAATCCACCAGGCAGAGTCCTCACACTTGCCGTCACCCTCACTCTTGGTTGGCCCATGTACTTAGCTTTTAATGTTTCAGGCAGGCCTTATGAAAGGTTTGCTTGCCACTATGATCCTTATGGTCCAATTTACACAGATCGTGAACGACTCCAAATATATATATCAGATGCAGGAGTACTTGCAGTATGCTATGGCCTTTTCCATCTTGTCATGGCGAAAGGGCTTGCCTGGGTGGTGTGTGTTTATGGTGTTCCATTGCTAGTGGTCAATGGATTTCTGGTGTTGATTACATTCTTGCAGCATACTCACCCTGCATTGCCGCACTACAATTCCTCTGAGTGGGACTGGTTGAGAGGAGCTTTGGCAACAGTTGACAGAGATTATGGAATTCTGAACAAGGTCTTCCATAATATTACAGACACTCATGTAGCACATCACTTGTTCTCCACAATGCCGCATTATCATGCAATGGAAGCTACAAAAGCAATAAAGCCTACTTTGGGAGAGTATTATCGGTTTGACGAGACTCCATTTGTCAAGGCAATGTGGAGAGAGGCAAGAGAGTGTATTTATGTAGAGCCAGATCACGGTACTGAGAACAAAGGTGTATTTTGGTACAACAATAAGTTGTGA 1332 0.4527 MKSKELENDIERNMLPTIVEMCSLKYYALFFNNTFFDLRSTCIVFILIPCAFRNYRGCVKMGAGGRTSVPPANRKPEADPLKRVPFEKPPFSLSQIKKAIPPHCFQRSVLRSFSYVVYDLTIAFCLYYVATRYFHLLPHPLSFLAWPIYWAVQGCILTGLWVIAHECGHHAFSDYQLLDDIVGLVLHSGLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAMQWFSKYLNNPPGRVLTLAVTLTLGWPMYLAFNVSGRPYERFACHYDPYGPIYTDRERLQIYISDAGVLAVCYGLFHLVMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYNSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPTLGEYYRFDETPFVKAMWREARECIYVEPDHGTENKGVFWYNNKL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03306 443 Pfam Domain of unknown function (DUF3474) 88 126 IPR021863 GO:0016717
Spst1g03306 443 CDD Delta12-FADS-like 107 389 - -
Spst1g03306 443 Pfam Fatty acid desaturase 145 404 IPR005804 GO:0006629
Spst1g03306 443 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 76 442 IPR012171 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03306 Spst-Chr1 41649705 41651131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03306 61 443 Lipid Metabolism Gene Families AT3G12120 75.718 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03306 K10256 - gmx:547815 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03306 1 41649705 41651131 Spst1g03306 1 41649705 41651131 ECH
Spst1g03306 1 41649705 41651131 Spst7g00252 7 1940244 1941401 PCT