Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03299 ATGATTGTGAAAGCGATCCAGCTTCAGATAAATGGATTAGTAAGTCAACGCTGGAGTTGGAAGGCCCGCACATTTTCATCCTTCTCCCCATTTTCCCCAATTCCATACCCTAACCCTTATACCAACCTGCTTCCCACCAAAACCATTCCTCGTAGAGTTCAATTCGCGCCATTTAACGCTTCCTCGACACCGCTTCCTTCTGCCGGAAATGTTCGAAATATCAAGTTCTGTCAGTGGTGTGGCGGTTCTACGAAGCATGATATTCCTGAAGGGGAAGAAAAATTGAGAGCTATATGTACGGTTTGTGGGAAGATTGCGTATCAGAATCCGAAGATGGTAGTTGGCTGCCTCGTTGAACATGATAACAAGGTCCTCCTTTGCAAGAGGAGTATTCAACCATCTCATGGCCTTTGGACACTTCCTGCTGGTTATTTAGAAATTGGAGAGTCAGCCGTGGATGGTGCCATTAGAGAAACAAGGGAGGAAGCAAATGCAAATGTGGAAGTAATTTCTCCATTTGCCCATCTGGATATTCCTTTAATTGGCCAAACTTACATGATATTCTTAGCAAAGCTGAAGAAGCCCCATTTTTCACCTGGTCCAGAATCATCAGCATGCCAACTTTTTCCACTTGATGATATACCTTTTAACTCTCTATCCTTTTCATCAATGGTGGTTACCTTAAGTTTGTATGTTGAGGATATTAGGACTGGAAAACTCAAATTCCATTATGGAACCATTAACAAAAGGCCGGGTACAAGTCCTTCTGATATTCGTGCCTATACACTAGATCATCATATGCAGTCATGA 810 0.4272 MIVKAIQLQINGLVSQRWSWKARTFSSFSPFSPIPYPNPYTNLLPTKTIPRRVQFAPFNASSTPLPSAGNVRNIKFCQWCGGSTKHDIPEGEEKLRAICTVCGKIAYQNPKMVVGCLVEHDNKVLLCKRSIQPSHGLWTLPAGYLEIGESAVDGAIRETREEANANVEVISPFAHLDIPLIGQTYMIFLAKLKKPHFSPGPESSACQLFPLDDIPFNSLSFSSMVVTLSLYVEDIRTGKLKFHYGTINKRPGTSPSDIRAYTLDHHMQS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03299 269 Pfam Nudix N-terminal 75 108 IPR029401 -
Spst1g03299 269 Pfam NUDIX domain 113 214 IPR000086 -
Spst1g03299 269 ProSitePatterns Nudix box signature. 143 164 IPR020084 GO:0016787
Spst1g03299 269 SUPERFAMILY Nudix 75 233 IPR015797 -
Spst1g03299 269 Gene3D - 72 108 - -
Spst1g03299 269 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 109 260 - -
Spst1g03299 269 PANTHER NUDIX HYDROLASE 23 76 263 - -
Spst1g03299 269 ProSiteProfiles Nudix hydrolase domain profile. 109 232 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03299 Spst-Chr1 41560150 41568439 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03299 K18453 - gmx:100808417 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03299 1 41560150 41568439 Spst1g03299 1 41560150 41568439 ECH
Spst1g03299 1 41560150 41568439 Spst7g00244 7 1883097 1887148 PCT