Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03247 ATGCTTAAACTCCTCAACAAGAACCTCCGTCGCCTCGGCTCCCACCTCAAGTGGCCGCTACGGCGTCGTTCCAAGTCCAAGCCACGCTTCGGCAAGGCCACTCCTAAACCCAAGACCGAACCAAGCACCGGCACCAGCACCATCGAACCTCCTCCTCCTCCTCCCAAACCAATACGAATCGCAACGTTCAACGCCGCATTCTTCTCCATGGCACCGGTGCTTCCCGAGCAAGAAAAAACGATCACCTCGGACGACGACAACGTGGAGAGACCAAAGTCAACGTACGAGCGACCAAGAAGCATTTTGAAACAGGCGCAGTCTCCGCTGCTGGGGAAGTCAAAGCTGCGAGTGTCGATCAACTTACCCGACAACGAGATTTCGCTGCGGCAAACGAGCTTCTCGGAGCACGAGAGAGGAAAAGGGTCGTTCTCATGGTCGTGGAGTTTCAACGAGGGAGTGGAGGGAGAGAGGCAGAGGAAAACGGTGGTTGAAGTTCTGAGAGAGATAAACGCCGACGTTTTGGGGTTGCAAGACGTGAAGGCGGAGGAAGAGAACGGGATGAAGCCTTTGTCTGATTTGGCTCGAGCTTTGGGGATGAACTACGTCTTCGCCGAAAGCTGGGCCCCTCAATACGGCAACGCCGTGTTGTCCAAGTGGCCCATTAAACGCTGGAAGCTTCAGAAAATCTTCGACCACACCGATTTCAGGAATGTTCTGAAGGCCACTATTGATGTACCCCAAGAAGGTGAACTGCACTTTTACTGCACCCACCTTGATCATCTTGATGAGAATTGGAGAATGAAGCAGATAAATGCAATAATTCAATCTAATGAGGAGCCACACATTTTAGCTGGGGGTCTTAATTCGCTTGATGAATCGGATTATTCCCAAGACAGATGGACAGATATTGTAAAGTACTATGAAGAGATGGGAAAGCCAACACCCAAGGTTGAAGTGATGAAATATCTTAAGAACAGACACTACACAGATGCAAAGGACTTTTCAGGGGAATATGAGTCTGTTGTCATGATCGCCAAAGGACAAAGTGTCCAAGGAACATGCAAGTATGGGACTCGGGTAGATTACATATTATCTTCCTCAGATTCTCCATACAAATTCGTTTCAGGGTCCTACTTAGTCCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTGAAAGCTGATGTGGTAAAAGTAAATAGTAATCCTCAAGAAAATCTGACAAAGAAGCAAGGACAACCAGGACAGAAAGTTGTAAGAATAAAATCAACTCCATCAAAATGTATATGGAAAACACAAACTGGAGATGTAGATTGA 1317 0.4761 MLKLLNKNLRRLGSHLKWPLRRRSKSKPRFGKATPKPKTEPSTGTSTIEPPPPPPKPIRIATFNAAFFSMAPVLPEQEKTITSDDDNVERPKSTYERPRSILKQAQSPLLGKSKLRVSINLPDNEISLRQTSFSEHERGKGSFSWSWSFNEGVEGERQRKTVVEVLREINADVLGLQDVKAEEENGMKPLSDLARALGMNYVFAESWAPQYGNAVLSKWPIKRWKLQKIFDHTDFRNVLKATIDVPQEGELHFYCTHLDHLDENWRMKQINAIIQSNEEPHILAGGLNSLDESDYSQDRWTDIVKYYEEMGKPTPKVEVMKYLKNRHYTDAKDFSGEYESVVMIAKGQSVQGTCKYGTRVDYILSSSDSPYKFVSGSYLVLSSKGTSDHHIVKADVVKVNSNPQENLTKKQGQPGQKVVRIKSTPSKCIWKTQTGDVD 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03247 438 MobiDBLite consensus disorder prediction 76 100 - -
Spst1g03247 438 Pfam Endonuclease/Exonuclease/phosphatase family 156 389 IPR005135 GO:0003824
Spst1g03247 438 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 57 412 - -
Spst1g03247 438 FunFam Endonuclease/exonuclease/phosphatase family protein 147 399 - -
Spst1g03247 438 MobiDBLite consensus disorder prediction 15 57 - -
Spst1g03247 438 MobiDBLite consensus disorder prediction 15 32 - -
Spst1g03247 438 Gene3D Endonuclease/exonuclease/phosphatase 144 398 IPR036691 -
Spst1g03247 438 MobiDBLite consensus disorder prediction 79 97 - -
Spst1g03247 438 SUPERFAMILY DNase I-like 54 396 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03247 Spst-Chr1 40956487 40959199 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03247 - - vra:106757483 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03247 1 40956487 40959199 Spst1g03247 1 40956487 40959199 ECH
Spst1g03247 1 40956487 40959199 Spst7g01167 7 35858002 35861119 PCT