Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03168 ATGGAGCCAAAGTGCACCATCAACTGTCGCCGCCCGGAGTTCGTTCCGACCCCTCTGCCGGAGAGTCCTCGAGTGCCAATGGAGTTTCTGTCACGCTCATGGAGTGCCTCAGCTCTTGAGGTCTCCAAAGCTCTCTCACATCACCACCCTTCTCTCTCCTCTTCTTGCATGCCTAATTCAAACAACACTAACAACACTTCCATTCCTGAAGAAACTGTTCCCAACAACAGCAACAACCACAACTTTCTCTCCGAAGATTTCTCCGCCATGTCTAAGAATCAGTTCTCTTTTGCTTCCTCTGCCACCTCTCAGCTTGTCCTTGAACGCATTATGTCACAGTCCGCAAGAGAGGAAGTGTCTCCGTTAACGTCGGGTAGATTATCTCACAGCAGTGAGCCTTTGAATGGTGGTGGTTCCTTAACCGGTACAGATAGCCCTCCGATTTCGCCTTCAGAAGAGTATGATGACGTTGTTAAGTTTTTTCGGGCAAATAACTCCATTCACCCGTTATTCAATGGTGGACGAGCCAGTGCAACTATTGGCAATGGCACAGCATGCTCAGGACCTAAAACTGTTGGAAGATGGTTGAAGGACCGAAGAGAAAAGAAGAAAGAAGAAAACAGAACCCATACTGCTCAGCTGCATGCCACTATTTCAGTGGCTGCAGTGGCTGCTGCCGTTGCAGCTATTGCGGCTGCAACAGCAGGATCGTCTGCTCCCAGCAAGGATGAGAAGATGGCAAAGACTGACATGGCTGTTGCTTCTGCAGCCACATTAGTTGCTGCACAGTGTGTAGAGGCTGCAGAGGCTATGGGGGCCGAGCGTGACCACCTAGCTTCTGTGGTCAGCTCTGCTGTGAATGTCCGTTCTCATGATGATATCACTACTCTTACAGCTGCAGCTGCCACAGCTCTACGAGGAGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGAATATAGCCACAGTGACACCACTAGAGCGAGGCATCGGGGGAATTGGACTATGTGGTAAAAGTATTAACAGCAATACTAGCAACACCAGCACTAGTGATAGTGGGGAAGTTTTCAATGGAGAAAATTTTCTAGGTGCCTGCAGCCAAGAGCTCATTGCAAAGGGCAGTGAATTACTGAAGCGCACCCGTAAAGGTGATCTTCACTGGAAAATAGTGTCTGTCTATATACATCGTACAGGCCAGGTAATGCTGAAAATGAAGAGCAGACATGTGGCAGGAACCATTACCAAAAAGAAAAAGAATGTTGTGCTAGATATATGCACGGATTTACCAGCATGGCCAGGGAGACATCTGTTTGATGATGGTGAAAAGCGACGGTACTTTGGATTGAAGACTGACCAAAGGGGGATTGTGGAGTTTGAGTGTCGAAATCAAAGAGAATATGACATCTGGACACAAGGGGTTTCGAGGCTACTCTCCATTGTAGCACAAAGACAAAATAGATATGGGAATTGA 1476 0.4783 MEPKCTINCRRPEFVPTPLPESPRVPMEFLSRSWSASALEVSKALSHHHPSLSSSCMPNSNNTNNTSIPEETVPNNSNNHNFLSEDFSAMSKNQFSFASSATSQLVLERIMSQSAREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSEEYDDVVKFFRANNSIHPLFNGGRASATIGNGTACSGPKTVGRWLKDRREKKKEENRTHTAQLHATISVAAVAAAVAAIAAATAGSSAPSKDEKMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSHDDITTLTAAAATALRGAATLKARALKEVWNIATVTPLERGIGGIGLCGKSINSNTSNTSTSDSGEVFNGENFLGACSQELIAKGSELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDICTDLPAWPGRHLFDDGEKRRYFGLKTDQRGIVEFECRNQREYDIWTQGVSRLLSIVAQRQNRYGN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03168 491 MobiDBLite consensus disorder prediction 117 152 - -
Spst1g03168 491 Pfam Plant pleckstrin homology-like region 377 482 IPR013666 -
Spst1g03168 491 PANTHER EXPRESSED PROTEIN 16 483 IPR040269 -
Spst1g03168 491 MobiDBLite consensus disorder prediction 48 72 - -
Spst1g03168 491 Pfam Auxin canalisation 20 330 IPR008546 -
Spst1g03168 491 MobiDBLite consensus disorder prediction 117 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03168 Spst-Chr1 40176239 40179733 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03168 - - gmx:100805743 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03168 1 40176239 40179733 Spst1g03168 1 40176239 40179733 ECH
Spst1g03168 1 40176239 40179733 Spst7g01268 7 42042032 42045611 PCT