Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03137 ATGGCAACTATCATCGCCGGCATCCCAACAACATCGATCTCTCGCGCAGGTCTCGTACTGAAGCGACCTTCTGGGATCTCGTCCTCTACCGTTCATGGATTGCCAGCAATGGGTAGGGTAGGGAAAGTGAGATGCTCCATGGAGGAAAAACCGTCCGTGCAGGAAAGCAATTCAAATGTGGGAATGGGAGCATCCTTGTTAGCAGCTGCATGCGCCGCAACCATGTCAAGCCCGGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACTGGGCTTCCCTTTGGGCTTAGCAATAACCTTCTTGGATGGATCATCTTCGGTGTCTTTGGTCTTATATGGGCACTCTTCTTTGTCTACACTTCCACTCTTGAAGAGGATGAAGAGTCTGGATTGTCCCTCTAA 408 0.5123 MATIIAGIPTTSISRAGLVLKRPSGISSSTVHGLPAMGRVGKVRCSMEEKPSVQESNSNVGMGASLLAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIIFGVFGLIWALFFVYTSTLEEDEESGLSL 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03137 135 Pfam Photosystem II reaction centre W protein (PsbW) 1 135 IPR009806 GO:0009507|GO:0009523|GO:0015979
Spst1g03137 135 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 135 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03137 Spst-Chr1 39922690 39923371 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03137 K02721 - gmx:100306223 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03137 1 39922690 39923371 Spst7g01343 7 51025776 51030600 PCT