Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03056 ATGGGTACACACAAAACAAAACACCACACTCACTCTCACACGCTCCTCTTTCTCACTTCACTGTTCTTTTTCGTTTCCATACCTACCTCACCTGCAGACAATACAAATTTGATCTATAAGGGTTGCGCCGACCAGAAAATGCCAGACCCCTACTCGCAGAATCTCAAACCGCTGTTATCTTCCTTGGTGGCAGAGTCAGTGCAAAAGGGTTTCGCCGCGACTACGCAGAACGCGCTCACCGGCGCGTTCCAATGCCGAGGGGACCTTACCAGCTCCGACTGCCACAGCTGCGTGTCCAAGATTTTGGACATGCTGGGGCGCCTGTGCGGCGGCGGAGAGCCCGCGGCAGCGGCGCGCGTCCAGCTCAGCGGGTGCTACCTCCGGTACGAGGTGGTCGGGTTTAAGCAGGTTCCCGCGACGCAGCTGCTTTACAAGGTTTGTGGGTCCCGCAGGGTGGTCGACGGCGGGGGGTTCGAGGCGAGGAGGGACGCGGCGTTTGGGATGGCGGAGAACGGCGTGCAAAGCAGCGGGAACTTGTTCTACACTGGGAGTTACCAGAGCCTTTATGTGTTGGGGCAGTGTGAGGGTAATTTGGGAAATGCAGATTGTGGGGCTTGTATTAGGAGTGCTGCGGAACAGACCAAGGATCAGTGTGGCTACTCTATTTCAGCGCAGGTTTATCTTCAGAATTGTTATATCAGTTACAGCTTTTACCCCAATGGAGTTCCCACTTCCTCTTCTTCCTCGGAGGGAGGAGGGCATCCGCACGCGGAGAGAACGGTGGCGCTTGCGGTGGGTGGGGTGGCGGCTCTGGGATTCTTGATTGTCTGCATGCTATTTCTGAAGTCGGTGTTCAAGAGAAGAGGTGGGAAGCGTTAG 879 0.5597 MGTHKTKHHTHSHTLLFLTSLFFFVSIPTSPADNTNLIYKGCADQKMPDPYSQNLKPLLSSLVAESVQKGFAATTQNALTGAFQCRGDLTSSDCHSCVSKILDMLGRLCGGGEPAAAARVQLSGCYLRYEVVGFKQVPATQLLYKVCGSRRVVDGGGFEARRDAAFGMAENGVQSSGNLFYTGSYQSLYVLGQCEGNLGNADCGACIRSAAEQTKDQCGYSISAQVYLQNCYISYSFYPNGVPTSSSSSEGGGHPHAERTVALAVGGVAALGFLIVCMLFLKSVFKRRGGKR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03056 292 Gene3D - 139 239 IPR038408 -
Spst1g03056 292 Gene3D - 34 134 IPR038408 -
Spst1g03056 292 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 15 284 - -
Spst1g03056 292 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Spst1g03056 292 FunFam cysteine-rich repeat secretory protein 3 140 239 - -
Spst1g03056 292 Pfam Salt stress response/antifungal 178 237 IPR002902 -
Spst1g03056 292 Pfam Salt stress response/antifungal 46 130 IPR002902 -
Spst1g03056 292 ProSiteProfiles Gnk2-homologous domain profile. 140 240 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03056 Spst-Chr1 39164260 39165427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03056 6 236 Receptor kinase-like Gene Family AT5G40380 26.800 3.28e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03056 - - gmx:100786830 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03056 1 39164260 39165427 Spst1g03056 1 39164260 39165427 ECH
Spst1g03056 1 39164260 39165427 Spst10g00188 10 1824234 1825282 PCT