Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00188 ATGAACGTTTCCCATTGCACCATCCTCCTCAGTCTAACCTTCTTCCTTTTCCTACCTTCTTCCAAACCACTTTCTGATTATACCACATTAGTCTACAAAACCTGTGCAACCCAAACCTTCAACCACCCATTATCTCAAACACTCGACTCTCTATTCCAACAACTCATCGCACAATCCTTCCAACACAAGTTCTTCAGAACCACCGAAGCCGGTAGCGACGACACGGTCATCTCAGGCCTTTTCCAATGCAGAGATGATATCAGCAAAGAAGAATGCTTCAGCTGCGTGAGCTTGCTACCTCAGATGTCAAACACCTTGTGCAGTGATTCCATATCAGCACGGGTACAACTTGACGGCTGCTACTTTCGCTACGAGACCGAGGAAGCAACCGGCGAATTGAGAAGTAACGGTTTGCTTCACAAAGAGTGTGGGAACCCAGTTGTGGAGTATGGGAATTTCAAAGAGTTGATGAAGGAGGCTTTTGCGACACTGGAAAGTGGGATTCTGAACAGTAATGGGTTCTACACAGTGAATTATAAATCCGTGAAAATAATGGCGCAGTGTGAAAGAGATTCAGAAACTTGTGATTGTAGCAATTGTGTGAGCGATGCAGTGGTGGTTGCTAAGGAAGAATGTGGCAGTTCCCTTTGGGCTCAAATATATATTGACAAGTGTTTCATAAGCTATGGCATTAACACTGTCCCAGGGGCAAGAAGAAATGGAAACACGGAAAAGTTAGCTGCAATAATCGTTGGAGGGATAGCTGCTGTGTTTCTGGGTTTTGCTTTGTTATCAATGGTTAGCTCTCGGTTTAGAAAAGACGATTATGAATAG 834 0.4424 MNVSHCTILLSLTFFLFLPSSKPLSDYTTLVYKTCATQTFNHPLSQTLDSLFQQLIAQSFQHKFFRTTEAGSDDTVISGLFQCRDDISKEECFSCVSLLPQMSNTLCSDSISARVQLDGCYFRYETEEATGELRSNGLLHKECGNPVVEYGNFKELMKEAFATLESGILNSNGFYTVNYKSVKIMAQCERDSETCDCSNCVSDAVVVAKEECGSSLWAQIYIDKCFISYGINTVPGARRNGNTEKLAAIIVGGIAAVFLGFALLSMVSSRFRKDDYE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00188 277 Gene3D - 27 128 IPR038408 -
Spst10g00188 277 Gene3D - 141 233 IPR038408 -
Spst10g00188 277 ProSiteProfiles Gnk2-homologous domain profile. 135 234 IPR002902 -
Spst10g00188 277 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 6 268 - -
Spst10g00188 277 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Spst10g00188 277 Pfam Salt stress response/antifungal 36 126 IPR002902 -
Spst10g00188 277 Pfam Salt stress response/antifungal 151 229 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00188 Spst-Chr10 1824234 1825282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00188 5 229 Receptor kinase-like Gene Family AT5G40380 28.017 9.02e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00188 - - vra:106771821 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00188 10 1824234 1825282 Spst10g00188 10 1824234 1825282 ECH
Spst1g03056 1 39164260 39165427 Spst10g00188 10 1824234 1825282 PCT