Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03017 ATGGAAAACTTGTTACGCCTAGTGGACCACGAAGACTTCTTCTCTCGTCGTTGCATTTGGGTGAACGGCCCTATAATTGTAGGGGCAGGTCCCTCAGGGCTTGCCACAGCAGCATGCCTTAGAGAACAAGGGGTGCCCTTCATGGTTCTGGAACGTGCAGATTGCATAGCCTCACTGTGGCAGAAACGGACCTATGACAGACTCAAACTTCACCTCCCTAAGCAATTCTGCCAGCTCCCGAAACGCCCTTTCCCTGAAGATTTCCCCGAATACCCCACAAAGAAACAGTTCATAGAGTACCTAGAGTCTTACGCCAGGCACTTCGAGATCAACCCTCAGTTCAACCAGTGTGTTCAGTCCGCAAGGTACGATGAGACTAGCGGGTTGTGGCGGGTGAAGACCGTTTCCTCGAGTGGCGCCACACGCAACGAGGTGGAGTACATTTGCAGGTGGCTCGTGGTGGCCACTGGGGAGAATGCTGAGTGTGTGATGCCTGAGATTGAAGGCTTGAGTGAGTTCAAGGGTGAGGTCATCCATGCTTGTCATTACAAGTCAGGGGAAAGCTTCAGGGGAAGGAAGGTCCTTGTTGTTGGCTGTGGCAATTCCGGCATGGAGCTCTCTCTTGATCTTTGCAACCACCATGCTTCTCCTTCCATGGTTGTTCGCAGCTCGGTTCACGTGTTGCCTAGAGAAGTATTTGGGAAATCAACGTTTGAATTCGCGGTTATGATGCTGCAATGGCTTCCCCTTTGGCTTGTTGACAAGATTCTCCTGATCTTGGCATGGTTTCTTCTGGGGAACATAGAGAACTTGGGGCTCAAAAGGCCTTCAACTGGTCCATTGGAGCTGAAGAACACAAAGGGGAAGACCCCGGTTCTGGATATTGGTGCCTTGGCGAAGATTAGATCCGGTGAAATAAAAGTGGTGCCAGGAGTCAAGAGATTCAATAATGGAGAAGTTGAGCTTGTCAATGGTGAAAAGCTTGATGTTGATGCAGTGGTGCTTGCAACCGGTTACCGCAGTAACGTTCCTTCTTGGCTTCAGGAAGGTGAATTTTTCTCAAAGAATGGATTCCCCAAAATGCCATTCCCTCATGGTTGGAAGGGAAATGCTGGACTTTATGCTGTGGGGTTCACAAAGAGAGGGCTCTCTGGTGCTTCTTCTGATGCTGTGAAAATTGCTCAAGATATTGGCAAAGTTTGGAAAAATGAGACTAAGCAAAAGAAACAGCGCACTACTGCTTGTCACAGAAGATGCATTTCTCAGTTCTAA 1272 0.4906 MENLLRLVDHEDFFSRRCIWVNGPIIVGAGPSGLATAACLREQGVPFMVLERADCIASLWQKRTYDRLKLHLPKQFCQLPKRPFPEDFPEYPTKKQFIEYLESYARHFEINPQFNQCVQSARYDETSGLWRVKTVSSSGATRNEVEYICRWLVVATGENAECVMPEIEGLSEFKGEVIHACHYKSGESFRGRKVLVVGCGNSGMELSLDLCNHHASPSMVVRSSVHVLPREVFGKSTFEFAVMMLQWLPLWLVDKILLILAWFLLGNIENLGLKRPSTGPLELKNTKGKTPVLDIGALAKIRSGEIKVVPGVKRFNNGEVELVNGEKLDVDAVVLATGYRSNVPSWLQEGEFFSKNGFPKMPFPHGWKGNAGLYAVGFTKRGLSGASSDAVKIAQDIGKVWKNETKQKKQRTTACHRRCISQF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03017 423 PRINTS FAD-dependent pyridine nucleotide reductase signature 24 43 - -
Spst1g03017 423 PRINTS FAD-dependent pyridine nucleotide reductase signature 193 211 - -
Spst1g03017 423 PRINTS Pyridine nucleotide disulphide reductase class-II signature 189 213 - -
Spst1g03017 423 PRINTS Pyridine nucleotide disulphide reductase class-II signature 23 45 - -
Spst1g03017 423 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 25 417 - -
Spst1g03017 423 FunFam Flavin-containing monooxygenase 24 406 - -
Spst1g03017 423 SUPERFAMILY FAD/NAD(P)-binding domain 191 401 IPR036188 -
Spst1g03017 423 Pfam Flavin-binding monooxygenase-like 26 344 IPR020946 GO:0004499|GO:0050660|GO:0050661
Spst1g03017 423 Gene3D - 24 407 IPR036188 -
Spst1g03017 423 SUPERFAMILY FAD/NAD(P)-binding domain 25 291 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03017 Spst-Chr1 38802977 38804830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03017 K11816 - gmx:100819987 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03017 1 38802977 38804830 Spst1g03017 1 38802977 38804830 ECH
Spst1g03017 1 38802977 38804830 Spst7g00489 7 4298395 4300647 PCT
Spst7g00697 7 6887427 6889012 Spst1g03017 1 38802977 38804830 PCT