Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03012 ATGGAGGAGGCGCTGGAACTGTCACGGGCGAAGGACACGAAGGAAAGGATGGCGGGCGTGGAGCGCCTCCACCAGCTTCTCGAAGCTTCCAGAAAGAGCCTCTCGTCTTCCGAGGTGACCTCGCTCGTCGACACTTGTATGGATCTCTTGAAGGACAACAACTTCCGCGTCTCGCAGGGCGCGCTCCAGGCGCTCGCCTCCGCCGCCGTCCTATCCGGTGACCACTTCAAGCTCCATTTTAACGCACTCCTCCCCGCCGTCGTCGACCGTCTCGGCGACGCCAAGCAGCCCGTCCGCGACGCCGCCAGGCGCCTCTTGCTCACTCTCATGGAGGTTTCTTCTCCTACAATAATTGTTGAAAGAGCAGGGTCCTTTGCTTGGGCACATAAAAGCTGGAGAGTCAGAGAGGAGTTTACACGAACTGTCACAGCTGCAATTAATCTATTTGCATCTACTGAGCTCCCACTTCAGCGGGCTATCCTTCCCCCTGTTTTGCATTTGCTTAATGATCCAAATCCTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAAGAAATGTATACACAAGCTGGGCCTCAATTTCGTGATGAACTTCACCGCCACAATCTTCCTTCATCTTTGGTGAAAGATATTAATGCCAGGCTTGAAGGCATTCAGCCAAAAGTTCGCACTTCAGATGGTATTCCGGGTGGATATATTACTGGGGAAATTAAGCATTTGACTGTTAATCCCAAGAAAAGTAGTCCAAAGGCTAAAAGTTCCTCAAGGGAGAGCTCTCTTTTTGGAGGAGAAGGTGACATCACTGAGAAACCCATAGATCCTGTGAAGGTATATTCAGATAAGGAGTTAATCAGGGAAATTGAGAAGATTGTATCTACCCTTGTGCCTGAAAAAGACTGGTCAATTCGAATTGCTGCTATGCAGAGAGTTGAAGGTCTTGTTTTAGGAGGTGCTGTGGATTATCCATGTTTTCGTGGGCTCTTGAAGCAACTTGTTGGACCTTTAAGCACACAATTGTCAGACCGAAGATCAAGCATTGTGAAGCAGGCTTGCCATCTATTGTGCTTTTTGTCAAAGGATCTCTTGGGTGATTTTGAAGCATGCGCTGAAATGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATCACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGTTGCGTAACTGCAAAGTTGCTCGTGTGCTTCCTCGTATAGCTGATTGTGCAAAAAATGACCGCAATGCAGTACTACGTGCAAGATGTTGTGAATATGCTCTTTTGGTCCTGGAACATTGGCCTGATGCACCAGAAATACATCGATCAGCTGATTTATATGAGGATATGATAAAGTGTTGTGTTTCAGATGCAATGAGTGAGGTACGATCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGATCTCGTCGCCTATTTGCATCCTTTGACCCTGCTATTCAACGGTTAATAAATGAAGAGGATGGAGGAATTCATCGGCGACATGCTTCACCTTCCATTCGAGATAGAGGTGTGCTAGGGTCATTATCTAGTCAAACCTCGGCTCCCTCTAATCTCCCTGGTTATGGAACTTCTGCAATTGTTGCGATGGATAGAAGTTCAAGTATATCATCAGGGACATCTATCTCCTCTGGCATACTTCTTTCACAAGCTAAGTCACTTGGTAAGGGTACAGAACGAAGTTTGGAAAGCATGTTACATGCAAGCAAACAGAAGGTTTCTGCTATTGAAAGCATGCTCAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTTCCGGTCATCAAGTTTGGATCTAGCGGCAAATTTTTCTCTTGTTGCCCCTAGTGCAGGAGTTGACCCTCCATCATCTCGTGATCCACCTTTCCCTGCGGCTGTCTCTGCATCTAATCATCTGACAAGCTCTTTAACAACAGAATCAATAGCTTCTGGCATCAATAAAGGTAGTAACAGAAATGGTAGTCTTGGTTTGTCTGACATAATCACCCAAATTCAAGCTTCAAAAGATTCTGCGAAGTTGTCCTATCATAGCAATGTTGGTATTGAACCTTTATCATCAATATCATCATATTCAAGTAAAAGGGCCTCAGAAAGATTACAAGAAAGAAGTTCACTTGATGATAACAGTGATATTAGGGAGACTAGGCGATTTATGAAACCCAATCATGATAAGCAGTATTTGGATGCTCCTTATAGAGATGGAAACTTTAGGGAATCACATAATAGTTATGTGCCTAATTTCCAGAGACCACTATTAAGAAAGAACGTGACTGGACGCATGTCTGCTGGCAGGAGGAGGAGTTTTGATGATAATCAGTTATCTCTTGGCGAGATACCAAATTATGCAGATGGACCCTCATCTCTTCATGAAGCTTTGAGTGAAGGACTTAGTTCAGGTTCTGACTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTTCATTCTTTGTTGCAGCAAGGGCCAAAGGGAGTTATAGAAGTTGTTCAGAATTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCACTTGGATGATCCCCATCATAAAGTTGCACAGGCTGCTCTTTCAACACTATCTGACATTGTTCCAGCATGCCGAAAGCCTTTTGAGGGTTATGTGGAAAGAATATTACCCCATGTATTTTCTCGGTTAATTGACCCTAAAGAACTTGTCAGGCAGCCATGTTCAACAACTTTGGAAGTTGTGAGCAAAACTTACAGTATAGATTCTCTTTTACCGGCATTATTACGCTCACTAGATGAACAGAGGTCTCCAAAGGCTAAATTGGCTGTTATTGAATTTGCAATAAATTCCTTCAACAAACATGCTATGAATCCAGAAGGGGCTTCTAATATTGGCATCCTAAAATTATGGCTTGCTAAGTTGACCCCTTTGGTTCATGACAAAAATACAAAGCTTAAAGAAGCAGCTATTACATGCATTATATCAGTGTATTCTCACTTTGATTCCACTGCTGTTCTTAATTTCATTCTGGGTTTGTCAGTAGAAGAACAAAATTCTTTGAGACGAGCTTTAAAACAATATACCCCTCGCATTGAAGTAGACCTAATAAACTATCTGCAGAACAAGAAAGAAAGACAACGTTCTAAATCTTCCTATGATCCATCTGATGTTGTGGGAACATCCTCTGAAGATGGATATGTTGGTTACTCTAGGAAGGCTCATTACCTCGGGAGGTATTCTGCTGGATCCCTTGATGGTGATGGTGGCAGGAAGTGGAGTTCCCAGGATTCAACACTGGTGAAAGCCAGCCTTGGTCAAGCATCTTCTGGTGAAACTCAGGAACATCTGTATCAAAATTTTGAAACTGATCCTAATAGTGGCAGTCTTGCTTCAAAAACTAAAGATCTTGCTTATGCAGTCAATACAATGGGTCAAAACTTTGGCTCTCAAACTAGCCAACATGGACATGTGGACAGTAGCATAAACTTGGAGGGTCTTTCAACTCCACGTCTAGATTTAAATGGTTTGATGTCATCAGAGCATTTAAATGTTGTTGAAGGCTATGTAAATGACAAGGAGCATCCTTCTGAAGTGGAACTTAATCATCACTCAGCCGAAGATGTAAAGATTAACTCCATAACAGAAACAGGACCCAGCATTCCTCAAATTCTTCATATGGTATGCAGTGGGGGTGATGGAAGCCCTATTTCAAGTAAACGGACTGCACTTCAACAATTAGTTGAAGCTTCTATAACAAATGATCATTCTATTTGGACCAAGGATCTGATAGAAATTATTGATATCAATTTCATGGTGTACTTGCAGTACTTCAATCAGATTTTGACAGTTGTGCTTGAGGTGCTGGATGATTCAGATTCCTCTGTCAAAGAGCTTGCTCTTTCACTGATAGTTGAAATGCTTAAAAACCAGAAAGGTGCCATGGAGAATTCTGTTGAGATTGTAATTGAGAAGCTGCTTCACGTTACAAAAGATATCATTCCTAAGGTCTCAAATGAAGCAGAGCACTGCCTGACCATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGTGTCATTGTTCCTCTACTGGTTACTGAGGATGAGAAAACACTTGTCATTTGCATAAATTGCTTAACAAAGCTTGTAGGGCGGCTTTCTCAGGAGGAACTGATGGCTCAGTTACCCTCGTTTCTGCCTGCACTTTTCGAAGCTTTTGGTAACCAGAGTGCAGATGTTCGTAAGACCGTTGTTTTCTGCCTCGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCATATTTGCAAGGGCTTAACAGCACACAGTTGAAGTTGGTCACCATTTATGCAAATCGAATCTCACAAGCCAGGACAGGCAAAACAATTGATGCGGTTCAAGATTAG 4416 0.4269 MEEALELSRAKDTKERMAGVERLHQLLEASRKSLSSSEVTSLVDTCMDLLKDNNFRVSQGALQALASAAVLSGDHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWAHKSWRVREEFTRTVTAAINLFASTELPLQRAILPPVLHLLNDPNPAVREAAILCIEEMYTQAGPQFRDELHRHNLPSSLVKDINARLEGIQPKVRTSDGIPGGYITGEIKHLTVNPKKSSPKAKSSSRESSLFGGEGDITEKPIDPVKVYSDKELIREIEKIVSTLVPEKDWSIRIAAMQRVEGLVLGGAVDYPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKDLLGDFEACAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIHRSADLYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFASFDPAIQRLINEEDGGIHRRHASPSIRDRGVLGSLSSQTSAPSNLPGYGTSAIVAMDRSSSISSGTSISSGILLSQAKSLGKGTERSLESMLHASKQKVSAIESMLRGLDLSDKHNSSFRSSSLDLAANFSLVAPSAGVDPPSSRDPPFPAAVSASNHLTSSLTTESIASGINKGSNRNGSLGLSDIITQIQASKDSAKLSYHSNVGIEPLSSISSYSSKRASERLQERSSLDDNSDIRETRRFMKPNHDKQYLDAPYRDGNFRESHNSYVPNFQRPLLRKNVTGRMSAGRRRSFDDNQLSLGEIPNYADGPSSLHEALSEGLSSGSDWSARVAAFNYLHSLLQQGPKGVIEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLSDIVPACRKPFEGYVERILPHVFSRLIDPKELVRQPCSTTLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHAMNPEGASNIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYSHFDSTAVLNFILGLSVEEQNSLRRALKQYTPRIEVDLINYLQNKKERQRSKSSYDPSDVVGTSSEDGYVGYSRKAHYLGRYSAGSLDGDGGRKWSSQDSTLVKASLGQASSGETQEHLYQNFETDPNSGSLASKTKDLAYAVNTMGQNFGSQTSQHGHVDSSINLEGLSTPRLDLNGLMSSEHLNVVEGYVNDKEHPSEVELNHHSAEDVKINSITETGPSIPQILHMVCSGGDGSPISSKRTALQQLVEASITNDHSIWTKDLIEIIDINFMVYLQYFNQILTVVLEVLDDSDSSVKELALSLIVEMLKNQKGAMENSVEIVIEKLLHVTKDIIPKVSNEAEHCLTIVLSQYDPFRCLSVIVPLLVTEDEKTLVICINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKTIDAVQD 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03012 1471 FunFam Protein peg1 266 513 - -
Spst1g03012 1471 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Spst1g03012 1471 PANTHER CLASP 32 1457 - -
Spst1g03012 1471 SUPERFAMILY ARM repeat 288 1461 IPR016024 -
Spst1g03012 1471 MobiDBLite consensus disorder prediction 707 729 - -
Spst1g03012 1471 Gene3D - 807 1031 IPR011989 -
Spst1g03012 1471 Pfam CLASP N terminal 284 500 IPR024395 -
Spst1g03012 1471 Pfam CLASP N terminal 813 1007 IPR024395 -
Spst1g03012 1471 Gene3D - 1 221 IPR011989 -
Spst1g03012 1471 Gene3D - 1239 1463 IPR011989 -
Spst1g03012 1471 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Spst1g03012 1471 MobiDBLite consensus disorder prediction 712 729 - -
Spst1g03012 1471 Gene3D - 267 506 IPR011989 -
Spst1g03012 1471 MobiDBLite consensus disorder prediction 246 261 - -
Spst1g03012 1471 MobiDBLite consensus disorder prediction 243 266 - -
Spst1g03012 1471 SMART TOG_3 3 224 IPR034085 -
Spst1g03012 1471 SMART TOG_3 1209 1463 IPR034085 -
Spst1g03012 1471 SMART TOG_3 270 514 IPR034085 -
Spst1g03012 1471 SMART TOG_3 797 1040 IPR034085 -
Spst1g03012 1471 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
Spst1g03012 1471 SUPERFAMILY ARM repeat 4 381 IPR016024 -
Spst1g03012 1471 MobiDBLite consensus disorder prediction 627 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03012 Spst-Chr1 38723249 38736248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03012 K16578 - gmx:100820523 2624.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03012 1 38723249 38736248 Spst1g03012 1 38723249 38736248 ECH
Spst1g03012 1 38723249 38736248 Spst7g00710 7 7017740 7034858 PCT