Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02982 ATGTTCAGTCTTACATCTCCAACTAGGGTTTTACCAATGGATTCGCTCCCAAAATTACGCCACTCTAATTCCACTCTCAACATTTCTCCATTTCCCACGCCCTTATCATCTTCTCTCTCTTTCCGCTCTCGACCACCACAGCACTTTCCTTCGTCATCGTCGTTTAGGTTACCTTCCATCAGAGCCTGCTCTTCACGCTCCTCAAACCACCCCTCAAAAAACGCTTCCTCTCTAACCCCGCTTCTCCAAACCCTAAACTCCTTCCTCGCCCCCCTGGCCCAAACCACTTGCATCGTCGTCGCCGCCGCTGCCTTCTTCTTCATGCGCTTCCACCACACGCCTGCTTTCGCCGCCACGCTCTCCCCGCCCACCGCCGACACTGAGCCCACCCTCACCGAGGAGGAAGCCAAGAGAGTTCTGGAGGAGCGGCTAAGCGCCAACCCCGCTGATTCCGACGCGCTTCGCGCGCTCATGGAATGTAAGATCAAAGCGCGCAAGATTGACGAAGCGTTCGACGTTCTGGACCGTCTGATCGAGCTACAACCGGAGGAGTACGAGTGGCCGCTGCTAAAGGCTAACATGCTCATCTACAATGACGACCACGCCGCTGCGCGTGAACTGTTCGAAGAAATCTTGAAGAAGGACCCGCTCCGCGTGGAGGCGTTCCACGGCATCGTCATGGCGACTGCGCAATTGAACGAGCCGTTGAGAGCGTTGTTGAAGAGAGTGGAGGAGGCGACTGAGGCGTGTAAGAAGCAGAATAGGGATTCGGATGTGAGAGACTTCAAGCTCTTGATTGCGCAGATTAAAGTGATGGAAGGGGATTTTCCTGAGGCACTTAAGGCTTATCAGGATTTGGTGAAGGAAGAGCCCAGGGACTTCAGGCCTTATTTGTGTCAAGGTATTATATATACCCTCTTAAAGAAGAAAGACGAAGCTGATAAGCAATTTGATAAGTTTCGCAGGCTTGTTCCTAAGGACCATCCTTACAAGGAGTATTTCGAGGACAACATGTTCGCGACCAAGTTCTTCTCGCAGAAATTGGAAAGGGAGGGAGCAGGTGCTAGGGGCTGA 1074 0.527 MFSLTSPTRVLPMDSLPKLRHSNSTLNISPFPTPLSSSLSFRSRPPQHFPSSSSFRLPSIRACSSRSSNHPSKNASSLTPLLQTLNSFLAPLAQTTCIVVAAAAFFFMRFHHTPAFAATLSPPTADTEPTLTEEEAKRVLEERLSANPADSDALRALMECKIKARKIDEAFDVLDRLIELQPEEYEWPLLKANMLIYNDDHAAARELFEEILKKDPLRVEAFHGIVMATAQLNEPLRALLKRVEEATEACKKQNRDSDVRDFKLLIAQIKVMEGDFPEALKAYQDLVKEEPRDFRPYLCQGIIYTLLKKKDEADKQFDKFRRLVPKDHPYKEYFEDNMFATKFFSQKLEREGAGARG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02982 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 40 328 - -
Spst1g02982 357 SUPERFAMILY TPR-like 134 327 IPR011990 GO:0005515
Spst1g02982 357 Pfam Tetratricopeptide repeat 135 192 - -
Spst1g02982 357 Pfam Tetratricopeptide repeat 264 292 IPR019734 GO:0005515
Spst1g02982 357 Coils Coil 236 256 - -
Spst1g02982 357 Gene3D Tetratricopeptide repeat domain 128 336 IPR011990 GO:0005515
Spst1g02982 357 SMART tpr_5 260 293 IPR019734 GO:0005515
Spst1g02982 357 SMART tpr_5 151 184 IPR019734 GO:0005515
Spst1g02982 357 SMART tpr_5 294 327 IPR019734 GO:0005515
Spst1g02982 357 SMART tpr_5 185 218 IPR019734 GO:0005515
Spst1g02982 357 ProSiteProfiles TPR repeat profile. 151 184 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02982 Spst-Chr1 38345751 38346824 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02982 - - vra:106756779 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02982 1 38345751 38346824 Spst7g00746 7 7686409 7687458 PCT