Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02975 ATGATGAAGAAACAATTGACAGGTATACGGGGTGATTCTCCCCTACAATCTGCAATCCGAGCTGGAAATTTAGAATTGGTTCTGGAAATCACCTCTCAGAGTCCAGAGGGAGAATTAAAGGAGCTGCTTTCAATGAAAAACAACTCGTGTGAAACTGCCTTATATGTTGCTGCTGAAAATGGTCATCTTGATATAGTGAAGGAATTGATTAGATACCATGATATTGGGTTGGCCGGCTTCAAAGCTCGAAATGGATTCGATGCATTCCACATCGCTGCTAAGAGTGGACATTTGGAGATATTGAAGGTCCTCATGGAGTTCTTTCCTGAAATTTCAATGACTGTTGATATGTCAAACACTACTGCGTTGCATACTGCTGTAGCACAAGGACATAGTGAGGTAGTAAATTTTCTTCTGGAAAATGGTAGCAGCTTGGTAACTATTGCGAAAAGCAATGGGAAAACTGTTCTGCATTCTGCTGCAAGAAGTGGCCACGTAGAGATAGTCAAGACCCTTTTAAAGAAAGAACCTGAAATTGCAGTGAGAATTGATAAGAAGGGCCAGACAGCACTCCATATGGCAGTTAAAGGACAGAATCTTGAATTGGTGGGCGAGCTTGTGAAACTGAACCCATCTTTGGCTAATATGGTGGATGCCAAGGGAAACACTGCACTGCATATAGCAACCCGGAAGGGTCGTCTACAGGTTGTTCAGAAGCTACTAGATTGCAGAGAAATAGACACAGATGTTATTAACAAATCTGGAGAAACTCCTTTAGATACTGCAGAGAAAAATGGTCGCTTGGAAATATCCAACTTTCTGCAACACGGTGGAGCTCAAAGTGCAAAGTCCATCAAGTCACCTACTACAAACACAGCCCTTGAGATCAAACGAACAGTGAGTGACATAAAAAGTGGAGTTCATAACCAGCTGGAACACACTTTTAAAACACAAAGGCGCATGCAAGGTATAGCGAAGCGAATTAACAGAATGCACACTGAGGGACTTAACAATGCTATCAACTCCAACATTGTTGTTGCTATCCTAATTGCGGCAGTTGCTTTTGCTGCCATATATAATGTCCCAGGCCAGTATCCTGAGCAACAAGATAAACTCTCTCCTTGGATGTCTCCTGGGGAAGCATATATTGCTCCCCATATTGGATTCAAGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATAGTCCAAACATCAGTGGTTGTAATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAATAAGTTGATGTGGGTAGCCTGTGTGCTAATTTCTGTGGCGTTTATTGCAATGTCATTCATAATTGTTGGAGATCATAAAGAGTTAGCAATAGCAGCCACAGCTCTAGGGACAGTGATTATGGCAGCTACTTTAGGAACACTCTGTTATTGGGTGATTGCTCACCGCCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATTTCTATGTCAGTAATGTCAGGATCGGAGAATGAGTACAAGACAGTGTACGCCATATAA 1566 0.4195 MMKKQLTGIRGDSPLQSAIRAGNLELVLEITSQSPEGELKELLSMKNNSCETALYVAAENGHLDIVKELIRYHDIGLAGFKARNGFDAFHIAAKSGHLEILKVLMEFFPEISMTVDMSNTTALHTAVAQGHSEVVNFLLENGSSLVTIAKSNGKTVLHSAARSGHVEIVKTLLKKEPEIAVRIDKKGQTALHMAVKGQNLELVGELVKLNPSLANMVDAKGNTALHIATRKGRLQVVQKLLDCREIDTDVINKSGETPLDTAEKNGRLEISNFLQHGGAQSAKSIKSPTTNTALEIKRTVSDIKSGVHNQLEHTFKTQRRMQGIAKRINRMHTEGLNNAINSNIVVAILIAAVAFAAIYNVPGQYPEQQDKLSPWMSPGEAYIAPHIGFKIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSFIIVGDHKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSISMSVMSGSENEYKTVYAI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02975 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Spst1g02975 521 Gene3D - 1 146 IPR036770 -
Spst1g02975 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Spst1g02975 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Spst1g02975 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Spst1g02975 521 SMART ANK_2a 254 283 IPR002110 GO:0005515
Spst1g02975 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Spst1g02975 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Spst1g02975 521 SMART ANK_2a 10 41 IPR002110 GO:0005515
Spst1g02975 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Spst1g02975 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Spst1g02975 521 Pfam Domain of unknown function 334 449 IPR026961 -
Spst1g02975 521 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Spst1g02975 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Spst1g02975 521 Gene3D - 147 321 IPR036770 -
Spst1g02975 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Spst1g02975 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Spst1g02975 521 Pfam Ankyrin repeats (3 copies) 81 145 IPR002110 GO:0005515
Spst1g02975 521 Pfam Ankyrin repeats (3 copies) 10 75 IPR002110 GO:0005515
Spst1g02975 521 Pfam Ankyrin repeats (3 copies) 216 279 IPR002110 GO:0005515
Spst1g02975 521 Pfam Ankyrin repeats (3 copies) 152 208 IPR002110 GO:0005515
Spst1g02975 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10 505 - -
Spst1g02975 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Spst1g02975 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Spst1g02975 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02975 Spst-Chr1 38285631 38288185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02975 2 521 Miscellaneous Gene Families AT1G07710 62.500 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02975 - - gmx:100787392 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02975 1 38285631 38288185 Spst10g01651 10 16984903 16988023 ECH
Spst1g02975 1 38285631 38288185 Spst1g02975 1 38285631 38288185 ECH