Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01651 ATGGCCTCTCACTCTAACCAATCAGGAACAGGAGCTGACGGGCAAGTAGAAAAGGACCCCCCACCGGCGATCCCAACAACAGCTTCTCAGAACCCACTTTCTGAGATATCGCCGTCGCCGTCGCCGTCATCCTCGACGGCGCCGGCGCTGGTGCTTTCGAACTCGGGGAAGCGCATCGATCAGACGGGAAAGAAGAAGTACGTGAAGCAGGTGACGGGAAGGCACAACGACACGGAGCTGCACCTGGCGGCACAGAGAGGCGACGTCAGCGCGGTGAGGCAGATCCTTTTGGATGTCGATTCTCAGATTATGGGAACTCTCGGCGACGATGACGACGTTGATCTCGACGCCGAGATTGCGGAGGTGCGCGCTTGCCTCGTCAACGAAGAGAACGAGCTTGGTGAGACCCCTTTGTTCACTGCCGCTGAAAAGGGTCATCTCCATGTCGTGAAGGAACTTCTCAACCATTCTACCGCTCAGACCGTTTCCAAGAAGAACCGATCAGGTTTTGATCCCTTGCATATTGCAGCCAGTCAAGGCCACCACCCCATTGTGCAGGTTTTACTAGATTATGACCCGGGCTTGAGCAAAACTATTGGTCCATCCAACTCGACACCACTAATAACCGCCGCAACAAGAGGACACACGGAAGTGGTGAATGAGCTGCTGTCGAAGGATTGTAGCTTGTTGGAGATTGCTAGATCGAATGGCAAAAATGCATTGCATTTAGCGGCTCGTCAGGGTCATGTGGAGATTGTGAAAGCCTTGCTCAGTAAAGATCCACAGTTGGCTCGGAGAACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGGCAGAGTTGTGATGTGGTAAAATTACTTCTTGATGCGGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGTAACACAGCATTACATGTGGCAACCAGGAAAAAGCGCGTAGAGATAGTGAATGAGTTATTACATCTGCCAGACACCAATGTTAATGCGTTAACCAGAGACCACAAAACAGCTCTTGACATTGCTGAAAATCTTCCACTCTCTGAAGAGGCATCAGATATAAAAGAATGTCTTTCTCGATATGGGGCACTTAGAGCTAACGAGCTCAACCAACCAAGGGATGAACTGAGGAAAACTGTTACTCAAATCAAGAAAGATGTTCACACTCAACTTGAACAAACCAAGAGAACCAACAAAAATGTTCATAATATTTCGAAAGAGCTAAGGAAACTACACAGGGAAGGAATCAACAATGCCACAAACTCAGTAACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCATTTGCTGCTATATTCACTGTGCCTGGTGGTGATAACGATGATGGCTCAGCAGTGGTAGCAGCTTATGCTGCTTTTAAAATCTTCTTCGTCTTTAATGCTATTGCACTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCTTAGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTGGTAGAGGTGATCAACAAGCTTATGTGGCTGGCTTCTGTCTGTACTTCAGTGGCATTTATTGCTTCTTCTTACATAGTTGTGGGTAGGAAGAATAGGTGGGCTGCAGTTCTGGTTACAGTAGTTGGAGGGGTGATAATATCTGGAGTTATTGGCACTATGACTTTCTATGTAGTGAGGTCTAAGAGAAGCAGGTCAATGAGGAAGAAGGAGAAGCAGCTAGCCAGGAGGAGTGGATCTAACTCATGGCATCATTCTGAATTCTCCAACTCCGAGGTTGATCGGATTTATGCGATTTGA 1791 0.4712 MASHSNQSGTGADGQVEKDPPPAIPTTASQNPLSEISPSPSPSSSTAPALVLSNSGKRIDQTGKKKYVKQVTGRHNDTELHLAAQRGDVSAVRQILLDVDSQIMGTLGDDDDVDLDAEIAEVRACLVNEENELGETPLFTAAEKGHLHVVKELLNHSTAQTVSKKNRSGFDPLHIAASQGHHPIVQVLLDYDPGLSKTIGPSNSTPLITAATRGHTEVVNELLSKDCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDIAENLPLSEEASDIKECLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDDGSAVVAAYAAFKIFFVFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRKNRWAAVLVTVVGGVIISGVIGTMTFYVVRSKRSRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAI 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01651 596 Pfam Ankyrin repeats (3 copies) 80 194 IPR002110 GO:0005515
Spst10g01651 596 Pfam Ankyrin repeats (3 copies) 268 333 IPR002110 GO:0005515
Spst10g01651 596 Pfam Ankyrin repeats (3 copies) 202 261 IPR002110 GO:0005515
Spst10g01651 596 ProSiteProfiles Ankyrin repeat profile. 270 302 IPR002110 GO:0005515
Spst10g01651 596 SUPERFAMILY Ankyrin repeat 80 350 IPR036770 -
Spst10g01651 596 ProSiteProfiles Ankyrin repeat region circular profile. 270 297 - -
Spst10g01651 596 ProSiteProfiles Ankyrin repeat region circular profile. 168 190 - -
Spst10g01651 596 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 47 580 - -
Spst10g01651 596 Gene3D - 53 193 IPR036770 -
Spst10g01651 596 MobiDBLite consensus disorder prediction 1 64 - -
Spst10g01651 596 Gene3D - 195 395 IPR036770 -
Spst10g01651 596 ProSiteProfiles Ankyrin repeat profile. 168 190 IPR002110 GO:0005515
Spst10g01651 596 ProSiteProfiles Ankyrin repeat profile. 133 165 IPR002110 GO:0005515
Spst10g01651 596 SMART ANK_2a 236 265 IPR002110 GO:0005515
Spst10g01651 596 SMART ANK_2a 202 231 IPR002110 GO:0005515
Spst10g01651 596 SMART ANK_2a 133 162 IPR002110 GO:0005515
Spst10g01651 596 SMART ANK_2a 304 334 IPR002110 GO:0005515
Spst10g01651 596 SMART ANK_2a 270 299 IPR002110 GO:0005515
Spst10g01651 596 SMART ANK_2a 75 104 IPR002110 GO:0005515
Spst10g01651 596 SMART ANK_2a 168 197 IPR002110 GO:0005515
Spst10g01651 596 MobiDBLite consensus disorder prediction 28 58 - -
Spst10g01651 596 Pfam Domain of unknown function 418 524 IPR026961 -
Spst10g01651 596 FunFam Ankyrin repeat-containing protein ITN1 isoform A 195 394 - -
Spst10g01651 596 FunFam Ankyrin repeat-containing protein ITN1 49 194 - -
Spst10g01651 596 ProSiteProfiles Ankyrin repeat region circular profile. 133 157 - -
Spst10g01651 596 ProSiteProfiles Ankyrin repeat region circular profile. 236 259 - -
Spst10g01651 596 ProSiteProfiles Ankyrin repeat profile. 236 268 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01651 Spst-Chr10 16984903 16988023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01651 16 596 Miscellaneous Gene Families AT3G12360 79.381 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01651 - - pvu:PHAVU_007G008900g 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02975 1 38285631 38288185 Spst10g01651 10 16984903 16988023 ECH
Spst10g01651 10 16984903 16988023 Spst10g01651 10 16984903 16988023 ECH