Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02862 ATGGGGATACTGCACGACGACGTAGTGATTATCAGGGAGGCAGAGAAAGAAGGTGAAACTACCATCATAACCGTCAACTGCCCCGACAAGACCGGTCTAGGTTGTGATTTGTGTCGTATAATTCTCTTCTTCGGTCTTAGCATTGTACGAGGAGACGTGTCCACTGACGGGAAATGGTGCTACATAGTTTTCTGGGTGGTGGGGAAGCAAAGGACCAGGTGGAGTTTGTTGAAGAAGAGGCTAATTGAGGCGTGTCCTTGTTGTTCCTCAGCTTCTGGGATTTCATATTACCGTTCAGAATTGCAACCTCCTAAACCTCCTGATGTATTCCTCTTGAAATTTTGTTGCCATGATCGAAAAGGCCTTTTACATGATGTTACAGAGGTTCTTAGTGAGCTAGAGCTCATCATACACAAAGTGAAGGTATCTACTACACCTGATGGCAAAGTGGTGGATCTGTTTTTCATCACGGATACCAGGGAACTTTTACATACAAAGAAGAGAAGGGACGATACAATTGAACAGCTGTCAGTTATTTTAGGGGATCCCTTAATTACTATTGACATTGAATTGGTTGGCCCAGAGATTACTGCTTGTTCTCAAGCATCTCCGTTCCTTCCAAGTTCAATCACAGAAGATATCTTTGATTTGGAATTACCTGGTTCATTACGAAGTGGGACTTCCACATCTGATTCTGTTTCTATTGGGATTGACAATTCGTTGAGTCCTGCTCACACGCTTGTCCAAGTTATATGTCAAGATCATAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGATTTCTTATGGGAGATTCTCAACAAAACCCAGAGGAAAATGTGAGCTTGACTTGTTCATAGTACAAGCAGATGGGAAAAAAATAGTTGACCCCAGCAAGCAGCAATCTTTGTCATCACGCCTTAGGATTGAACTACTTCATCCCCTCAGAGTAAATGTTGTAAGCAGGGGCCCTGATACAGAGCTGCTGGTTGCAAACCCTGTGGAGTTGTCTGGCAAAGGACGACCCCTCGTTTTTTATGATATTACTCTTGCTCTCAAAATGCTTGGCCCCTGCATCTTTTCGGCTGAAGTTGGAAGACATGTGATTGGAGATCGGGAGTGGGAAGTTTATAGAATCTTGCTTGATGACGGGGAGGGTTTATCTGTTCCAAGGAACAAGATTGAGAAAGGAGTTTGGAAGATGTTGATGGGTTGGGTGTGA 1239 0.4334 MGILHDDVVIIREAEKEGETTIITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVVGKQRTRWSLLKKRLIEACPCCSSASGISYYRSELQPPKPPDVFLLKFCCHDRKGLLHDVTEVLSELELIIHKVKVSTTPDGKVVDLFFITDTRELLHTKKRRDDTIEQLSVILGDPLITIDIELVGPEITACSQASPFLPSSITEDIFDLELPGSLRSGTSTSDSVSIGIDNSLSPAHTLVQVICQDHKGLLYDIMRTLKDYNIQISYGRFSTKPRGKCELDLFIVQADGKKIVDPSKQQSLSSRLRIELLHPLRVNVVSRGPDTELLVANPVELSGKGRPLVFYDITLALKMLGPCIFSAEVGRHVIGDREWEVYRILLDDGEGLSVPRNKIEKGVWKMLMGWV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02862 412 SUPERFAMILY ACT-like 18 81 IPR045865 -
Spst1g02862 412 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 9 400 IPR040217 -
Spst1g02862 412 Pfam ACT domain 112 168 IPR002912 -
Spst1g02862 412 ProSiteProfiles ACT domain profile. 247 328 IPR002912 -
Spst1g02862 412 SUPERFAMILY ACT-like 107 176 IPR045865 -
Spst1g02862 412 SUPERFAMILY ACT-like 244 298 IPR045865 -
Spst1g02862 412 ProSiteProfiles ACT domain profile. 111 194 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02862 Spst-Chr1 37215856 37218583 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02862 - - gmx:100818216 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02862 1 37215856 37218583 Spst1g02862 1 37215856 37218583 ECH
Spst1g02862 1 37215856 37218583 Spst7g01021 7 18182685 18186114 PCT