Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02819 ATGCGGGCCGTTGTTCCCCTGTCGCTCGCGTTAGCCACCGTCGCGTTGGCGACGACGGTGTTGCACGGCGCTTTGACGGGGGCTTTTCTTCCTCTAGAACGGGCCATTCCTCTGAACCAAAGAGTGGAGTTGGAGGCACTGAGAGCTCGCGACAGAGCACGCCACGGTCGAATCTTGCAAGGTGTCTTTGGTGGCGTTGTCGACTTCGCCGTCCAAGGAACCTCCGACCCTTACTTCGTTGGGTTGTATTTCACGAAAGTGAAGCTGGGATCTCCTGCGAAAGAGTTTTATGTTCAGATTGATACTGGAAGTGACATATTGTGGCTGAATTGCATGACTTGCAGTAATTGCCCGCAATCTAGTGGGTTAGGGATTGAGCTGGATTTCTTTGACACGGCCGGTTCATCCACTGCTGCACTTGTTTCCTGCCGTGATCCAATCTGTTCTTATGCGGTTCAAACTGCGACAAGCGAATGCTCTTCTCAGGCTAATCAGTGCATCTACACTTTTCAGTATGGAGATAGAAGTGGGACAACTGGTTATTATGTTTCTGATACGATGTATTTTGACACAGTCCTGGGACAGTCATTGGTTTCTAACACGTCATCTAACATCGTTTTTGGGTGTAGCACCTACCAGTCTGGGGATTTGACCAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTATATCACAACTGTCATCACGGGGTGTGACACCCAAAGTGTTCTCTCATTGCCTAAAAGGACAAGACAATGGAGGAGGTGTTCTAGTTCTAGGTGAAATTTTGGAGCCAACCATTGTTTATAGCCCACTTGTCCCATCACAGCCTCATTACAATTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTTCTCCCAATAGATTCAGAAGTATTTGCGACAACTAATAATGGCGGAACTATAGTTGACTCTGGCACAACATTGGCATACCTTGTTCAAGAAGCATACAATCCTTTTGTCGATGCTATAACTGCTGCTGTGTCAAAGTTCTCGAAACCCATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCGAACAGTGTAGGTGATATATTTCCTCAAGTCAGTTTAAATTTCATGGGCGGAGCATCTATGGTTTTAGATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCGTTGGCTTCCAAAAAGTAGAGCAGGGATTCACAATCTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATATGACTTAGCTAATCAACGAATTGGATGGACTAACTATGATTGTTCCTTGGCTGTAAACGTCTCTCTGGCTACGAGCAAGAGCAAGGATGCCTACATCAACAATTCAGGACACATGAGTGTGGGCTGTTCCCACATAGGCACTTTCTCCAAGTTTCTAGCAGTAGGCATTGCTACCTTCCTTGTGCACATAGTTTTCATGGAGTTCCAATTTTTGTAA 1497 0.4509 MRAVVPLSLALATVALATTVLHGALTGAFLPLERAIPLNQRVELEALRARDRARHGRILQGVFGGVVDFAVQGTSDPYFVGLYFTKVKLGSPAKEFYVQIDTGSDILWLNCMTCSNCPQSSGLGIELDFFDTAGSSTAALVSCRDPICSYAVQTATSECSSQANQCIYTFQYGDRSGTTGYYVSDTMYFDTVLGQSLVSNTSSNIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGVTPKVFSHCLKGQDNGGGVLVLGEILEPTIVYSPLVPSQPHYNLNLQSIAVNGQLLPIDSEVFATTNNGGTIVDSGTTLAYLVQEAYNPFVDAITAAVSKFSKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMVLDPEHYLMHYGFLDGAAMWCVGFQKVEQGFTILGDLVLKDKIFVYDLANQRIGWTNYDCSLAVNVSLATSKSKDAYINNSGHMSVGCSHIGTFSKFLAVGIATFLVHIVFMEFQFL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02819 498 FunFam Aspartic proteinase-like protein 2 66 269 - -
Spst1g02819 498 CDD pepsin_A_like_plant 83 441 IPR034161 -
Spst1g02819 498 FunFam Aspartic proteinase-like protein 2 270 448 - -
Spst1g02819 498 PANTHER ASPARTYL PROTEASES 25 435 IPR001461 GO:0004190|GO:0006508
Spst1g02819 498 SUPERFAMILY Acid proteases 78 443 IPR021109 -
Spst1g02819 498 Gene3D Acid Proteases 270 447 IPR021109 -
Spst1g02819 498 ProSiteProfiles Peptidase family A1 domain profile. 83 437 IPR033121 -
Spst1g02819 498 Pfam Xylanase inhibitor C-terminal 286 437 IPR032799 -
Spst1g02819 498 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Spst1g02819 498 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Spst1g02819 498 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Spst1g02819 498 Pfam Xylanase inhibitor N-terminal 83 268 IPR032861 -
Spst1g02819 498 Gene3D Acid Proteases 67 269 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02819 Spst-Chr1 36730399 36735667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02819 67 442 Miscellaneous Gene Families AT1G44130 27.889 1.80e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02819 - - gmx:100804147 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02819 1 36730399 36735667 Spst1g02819 1 36730399 36735667 ECH
Spst1g02819 1 36730399 36735667 Spst7g00968 7 16438547 16443073 PCT