Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02679 ATGGCTCCTCCTTACATTATTCTGTTTTTATCACTAACTCTTGTCTCTCACACCGCGTTCACTTCCTCCACCCCCAACACCATCACTCTCCCTCTCTCCCCTCTATTCACCAAACCCCAATCCTCATCGGAACCCTTCCACTCTCTCAAACTCGCCGCTTCCGCTTCTCTAACCCGCGCCCACCACCTCAAACACCGCAATTCTTCCTCCTTCGTCGTCGCAACCCAAGTTTACCCCAAAAGCTACGGTGGCTACTCCATAAATCTCAGTTTCGGAACCCCACCCCAAACCTCCCCCTTCGTTCTCGACACGGGAAGCAGCCTCGTGTGGTTCCCTTGCACCTCCCGCTACATCTGCTCCCACTGTCTCTTCCCCAACATCGACCCCACCAAAATCCCCACCTTCATTCCCAAGAACTCCTCCACCGCCAAGCTCCTCGGTTGCACAAACCCCAAATGCGGTTACCTCTTCGGCTCAGACCTTCAATCTCGCTGCCCCCAATGCATATCCAACTCCCAAAACTGTTCCCTCACTTGCCCCGCTTACATTATCCAATACGGCTCGGGTTCCACCGCGGGCTTCTTACTCCTCGACAATCTCAATTTCCCGGCAAAAATCGTTCCCCAATTTCTCGTCGGTTGCTCCATCTTCTCCATCCGCCAACCCTCCGGCATCGCCGGCTTCGGACGCGGCAAAGAGTCTCTCCCTTCGCAAATGGCCCTCAAGAGATTCTCTTACTGCTTAGTTTCTCACCGCTTCGACGACTCGCCGGAAAACAGCGACCTTGTTTTACAAATAAGCTCCACCGGCGACACCAAAACCAACGGCCTCAGGTACACGCCGTTTCGCCCCAATCTCTCTGTCAACAACCCCGCGTTCCAGGAGTATTACTATCTTAGCCTCCGAAAGGTCATTGTCGGGGGTCAGCACGTTAAGATTCCGTTTAGCTTTTTGGAGCCAGGTCCTGACGGTAACGGCGGCACCATCGTGGACTCTGGATCCACATTCACGTTCATGGAAAGACCCGTTTATGATTTAGTGGTCCAAGAGTTTGTGAAGCAGTTGGGGAATTATTCCAGGGCCAAGGACGTTGAGACCCAATCTGGGTTGAGTCCCTGTTTTAATATTTCCGGCGCCGAGACCGTGAATTTCCCGGAGTTTACTTTTCAGTTCAAAGGCGGCGCCAAAATGACGCTGCCGGTGGCAAATTATTTCTCGTTGGTCGGCGATTCGGAGGTGGTGTGTTTGACAGTTGTCTCCGAAGGTGGCACCGGTCCCGCGAGGACGTCCGGTCCCGCCGTGATTTTGGGGAACTATCAGCAGCAGAATTTCTACATTGAATATGATTTGGAGAATGAGAGGTTCGGGTTCGGCCCCCAGAGTTGCAAAAGGAAAGCTTAG 1401 0.5318 MAPPYIILFLSLTLVSHTAFTSSTPNTITLPLSPLFTKPQSSSEPFHSLKLAASASLTRAHHLKHRNSSSFVVATQVYPKSYGGYSINLSFGTPPQTSPFVLDTGSSLVWFPCTSRYICSHCLFPNIDPTKIPTFIPKNSSTAKLLGCTNPKCGYLFGSDLQSRCPQCISNSQNCSLTCPAYIIQYGSGSTAGFLLLDNLNFPAKIVPQFLVGCSIFSIRQPSGIAGFGRGKESLPSQMALKRFSYCLVSHRFDDSPENSDLVLQISSTGDTKTNGLRYTPFRPNLSVNNPAFQEYYYLSLRKVIVGGQHVKIPFSFLEPGPDGNGGTIVDSGSTFTFMERPVYDLVVQEFVKQLGNYSRAKDVETQSGLSPCFNISGAETVNFPEFTFQFKGGAKMTLPVANYFSLVGDSEVVCLTVVSEGGTGPARTSGPAVILGNYQQQNFYIEYDLENERFGFGPQSCKRKA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02679 466 Pfam Xylanase inhibitor C-terminal 297 458 IPR032799 -
Spst1g02679 466 Gene3D Acid Proteases 264 466 IPR021109 -
Spst1g02679 466 FunFam Aspartic proteinase nepenthesin-2 60 262 - -
Spst1g02679 466 Pfam Xylanase inhibitor N-terminal 85 252 IPR032861 -
Spst1g02679 466 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Spst1g02679 466 PRINTS Pepsin (A1) aspartic protease family signature 434 449 IPR001461 GO:0004190|GO:0006508
Spst1g02679 466 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Spst1g02679 466 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Spst1g02679 466 CDD pepsin_A_like_plant 84 462 IPR034161 -
Spst1g02679 466 SUPERFAMILY Acid proteases 80 462 IPR021109 -
Spst1g02679 466 Gene3D Acid Proteases 59 257 IPR021109 -
Spst1g02679 466 PANTHER OS07G0603500 PROTEIN-RELATED 33 462 - -
Spst1g02679 466 FunFam Aspartyl protease family protein 268 465 - -
Spst1g02679 466 ProSiteProfiles Peptidase family A1 domain profile. 85 458 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02679 Spst-Chr1 35237503 35238903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02679 68 464 Miscellaneous Gene Families AT1G44130 25.293 9.47e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02679 - - gmx:100805927 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02679 1 35237503 35238903 Spst1g02679 1 35237503 35238903 ECH
Spst1g02679 1 35237503 35238903 Spst7g00139 7 1047586 1048968 PCT