Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02420 ATGGAGATATCTAAGAAAGAAGAAACAGAGGAAATCTCTCAGCTGTACTTCCAAGATTCAGCAAATCAGCCAGCTTGCCAGTATGAAGTGGTTAAAGTTAAACACATGGTGAGTATGATTAAAAATGTTGACTTGACGGAGTTTATGAAATTGGGGAGGACTTGGAGTAAGAACTGTGACATAAAGGGAAACCCGGATCTCAGTCATATGAAGAGGCCCTCAACACTCGTGGAAGTGCTTCTGGTGCTTGCATTGCTCAGTTGTAGCCCATGGATAGTGCGGAGCAACACGCTTTGCCAACAGACAAACGACGAAGTTCGACCTCACAGCGTCAGCATCACTGAATTTGGAGCAGTTGGCGATGGGATCACTCTCAACACAAAAGCATTTCAAAATGCTATCTTCTACCTGAATTCCTTTGCGGACAAAGGTGGAGCTAAGCTTTTTGTCCCGGCTGGTCGGTGGTTAACGGGTAGTTTTGATCTCATCAGTCATCTCACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAATTAACCCTGAAGATTGGCCAGTTGTTGATCCTCTACCGTCGTATGGGAGAGGAAGAGAGTTGCCGGGTGGAAGGCATAAAAGCCTCATTTTTGGGCGCAATTTGACTGATGTGATCATAACAGGTAATAATGGAACTATCGATGGTCAAGGGAGTATATGGTGGAGCAGGTTTAGGAAAAAAACTCTGGACTATACGCGTCCCCATTTGATAGAATTGATGAACTCAACCGGGGTTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACAATCCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAAAGTGGCGATCCTTGCTCCTCTTGATTCTCCAAACACTGATGGGATTGATCCAGACTCTTCTGACAATGTATGCATTGAAGACTGTTACATAAGCACTGGTGATGATCTGATTGCCATCAAGAGCGGTTGGGATGAGTATGGCATTGCATATGGTCGCCCCTGCACAAACATTATCATCCACAGGATTGTTGGCAAAACTCAAACGAGTGCAGGGATTGCAATAGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGTAGAAGATATTCAATTCTACGATTCATATACAGCAATCAGAGTAAAGACTTCTCCTGGAAGGGGTGGTTATGTTAGAAACATCTATGTCTCAAACGTGACCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTGTATGGGGAGCATCCAGATGATGCTTATGATCCAGATGCTCTACCTGTAATAGAAAAGATTACAATCAAAGATGTGGTGGGAGAGAATATCAAAACGGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTCAATGTTTGCCTATCAAACATTGTTCTTAATGTGACCTCAAACTATCCATGGAACTGCTCCTATGTTAAAGGATATTCTGACTTGGTTCTTCCAGAAGCTTGTGAGCCTCTCAAGGAAAGAATATTCCCTGAGCATTGTTCAGATTGTTACTATTTGGCAAATCAAATTCAGAGTTCCAAAAGCCAACATAGAGGTGCTTGGTTTATGTCTTGGTAA 1605 0.4237 MEISKKEETEEISQLYFQDSANQPACQYEVVKVKHMVSMIKNVDLTEFMKLGRTWSKNCDIKGNPDLSHMKRPSTLVEVLLVLALLSCSPWIVRSNTLCQQTNDEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSINPEDWPVVDPLPSYGRGRELPGGRHKSLIFGRNLTDVIITGNNGTIDGQGSIWWSRFRKKTLDYTRPHLIELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVQKVAILAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPCTNIIIHRIVGKTQTSAGIAIGSEMSGGVSEVHVEDIQFYDSYTAIRVKTSPGRGGYVRNIYVSNVTLANVDIAIRFTGLYGEHPDDAYDPDALPVIEKITIKDVVGENIKTAGLIEGIEGDNFVNVCLSNIVLNVTSNYPWNCSYVKGYSDLVLPEACEPLKERIFPEHCSDCYYLANQIQSSKSQHRGAWFMSW 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02420 534 Gene3D - 92 487 IPR012334 -
Spst1g02420 534 SMART pbh1 339 361 IPR006626 -
Spst1g02420 534 SMART pbh1 305 337 IPR006626 -
Spst1g02420 534 SMART pbh1 367 388 IPR006626 -
Spst1g02420 534 SMART pbh1 255 280 IPR006626 -
Spst1g02420 534 SMART pbh1 396 417 IPR006626 -
Spst1g02420 534 SUPERFAMILY Pectin lyase-like 104 500 IPR011050 -
Spst1g02420 534 PANTHER PECTIN LYASE-RELATED 85 516 - -
Spst1g02420 534 Pfam Glycosyl hydrolases family 28 206 486 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02420 Spst-Chr1 32907804 32911709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02420 70 534 Glycoside Hydrolase AT3G62110 66.596 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02420 - - gmx:100782602 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02420 1 32907804 32911709 Spst10g01854 10 18781329 18784368 PCT