Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01854 ATGAAGAGACTTTCAACTTTGGTGGATGTGTTTCTGGTTCTTGCATTGTTCAGTTGTAGCCCATGGACTGTGTGGGGCAGCTCTTACTGCAATCGGATAAACTTGAAGGAAGTGCGGCCTCACAGTGTCAGTATTACCGAATTTGGGGCAGTTGGCGATGGGATCACTCTCAATACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCCAAGCTTTTTGTTCCCGCTGGCCGGTGGTTAACTGGAAGCTTTGATCTCATCAGCCATCTAACATTGTGGTTGGACAGTGATGCAGTAATTCTTGGATCAACGAACTCTGACGACTGGCCAGTTGTGGAGCCTCTACCATCATATGGTCGAGGAAGGGAGTTGCCCGGTGGAAGGCATAGAAGCCTCATTTATGGGCGTAATTTGACTGATGTTGTAATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGGACAAGTTTCGGAACAAAACATTGGATTATACACGTCCTCATTTGGTCGAGTTGATGAATTCAACCGGGGTTCTCATCTCAAACGTAACTTTCTTGAACTCACCATTTTGGACCGTTCACCCCGTATATTGCAGCCATGTTACAATTCATAATGTCACCATCATTGCTCCTCTTAGTTCACCAAATACAGATGGAATTAATCCAGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATCAAAAGTGGATGGGATGGATATGGCATTTCATTTGGTCGACCCAGTACAAATATTAACATTCGGAGGCTCACTGGGAAAACAACGAGTGCAGGGATTGCTATCGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTTCATGCAGAAGATATTTACATTTTTGATTCACATAGTGCAATTAGAATAAAAACTTCCCCTGGCAGGGGTGGTTATGTTAGAAATGTCTACATCTCTAACGTGATCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCAGATGACAATTATGACCCAGATGCTCTTCCAGTAATTGAAAGGATTACTATCACGGATGTGATAGGGGGAAAAGTCAAACGTGCGGGCCTTATACAGGGTATTAAAGGTGACAACTTCGTCAATATTTGCCTATCAAACATCACACTTAATGTGACCTCAAAATTGCCATGGAACTGCTCTTACGTTAAAGGATACTCTGACCTGGTTTCACCGGAAGCTTGTGAGCCTCTCAATGAGCGAATATCCCCTGAGCATTGTTCTGACTGTTGCTATTCACCAAACCACTTAAAGAGTTTGGGTAATCAAAACCGGGTTGCTTGGGTTTAG 1389 0.4269 MKRLSTLVDVFLVLALFSCSPWTVWGSSYCNRINLKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDSDAVILGSTNSDDWPVVEPLPSYGRGRELPGGRHRSLIYGRNLTDVVITGNNGTIDGQGSIWWDKFRNKTLDYTRPHLVELMNSTGVLISNVTFLNSPFWTVHPVYCSHVTIHNVTIIAPLSSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLTGKTTSAGIAIGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVRNVYISNVILANVDIAIRFTGLYGEHPDDNYDPDALPVIERITITDVIGGKVKRAGLIQGIKGDNFVNICLSNITLNVTSKLPWNCSYVKGYSDLVSPEACEPLNERISPEHCSDCCYSPNHLKSLGNQNRVAWV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01854 462 Gene3D - 25 418 IPR012334 -
Spst10g01854 462 PANTHER PECTIN LYASE-RELATED 24 443 - -
Spst10g01854 462 SMART pbh1 327 348 IPR006626 -
Spst10g01854 462 SMART pbh1 298 319 IPR006626 -
Spst10g01854 462 SMART pbh1 271 292 IPR006626 -
Spst10g01854 462 SMART pbh1 237 269 IPR006626 -
Spst10g01854 462 SMART pbh1 210 236 IPR006626 -
Spst10g01854 462 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Spst10g01854 462 SUPERFAMILY Pectin lyase-like 36 430 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01854 Spst-Chr10 18781329 18784368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01854 1 462 Glycoside Hydrolase AT3G62110 67.872 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01854 - - gmx:100786985 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01854 10 18781329 18784368 Spst10g01854 10 18781329 18784368 ECH
Spst1g02420 1 32907804 32911709 Spst10g01854 10 18781329 18784368 PCT