Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02407 ATGACAACTTCATTCTCCACCTTAATATTTGTCTCTTTTGCTCTTCTCTTCTCTTCACCTTTTGGGGCTGAAGCACGGCCCAAGCCAAATATACCCATCTCTTCTCTCGTCACCAAAACTCTTTTCGACTCCTTTTTCCTACACAAAGATGACGCTGCATGCCCTGCTAAAGATTTCTACACCTACCACTCCTTCATTCGTGCATCAAAATCCTTCCCTGCATTCGGTACCACTGGTTGTTTAGCCACGCGCAAGCGTGAGATCGCTGCGTTTCTCGCTCAGGTTTCTCATGAAACCACTGGTGGATGGGCCACTGCACCTGATGGTCCATTTGCTTGGGGCTTGTGCTTCAAGGAAGAAATTAGTCCTCAGAGTAATTACTGTGATTCTACTAACACCCAATGGCCTTGCTTCCCTGGCAAAAGTTACAAGGGAAGAGGACCAATTCAACTTTCTTGGAACTACAACTATGGACCAGCAGGGAAGGCGTTGGGATTTGATGGGCTGAGGAATCCAGAGATTGTGGCGAACAATTCTGAGATAGCCTTCAAAACTGGTCTGTGGTTTTGGATGACTGAGCAAAAGCCAAAACCTTCTTGCCACGACGTGATGGTTGAGAAATACGTGCCTACAGAAGCTGACATAGCAGCGAACCGAACATCTGGTTATGGCTTGGTGACTAACATAATCAATGGTGGACTGGAATGTGGGATTCCTGGTGATGCAAGAGTCAATGATCGGATTGGGTTTTTCGAAAGATATACAAAGTTGTTCAACGTGGACACTGGACCTAACTTGGATTGTGCATATCAGAAACCCTTCTAA 825 0.4594 MTTSFSTLIFVSFALLFSSPFGAEARPKPNIPISSLVTKTLFDSFFLHKDDAACPAKDFYTYHSFIRASKSFPAFGTTGCLATRKREIAAFLAQVSHETTGGWATAPDGPFAWGLCFKEEISPQSNYCDSTNTQWPCFPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSEIAFKTGLWFWMTEQKPKPSCHDVMVEKYVPTEADIAANRTSGYGLVTNIINGGLECGIPGDARVNDRIGFFERYTKLFNVDTGPNLDCAYQKPF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02407 274 ProSitePatterns Chitinases family 19 signature 1. 54 76 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst1g02407 274 FunFam Endochitinase (Chitinase) 119 177 - -
Spst1g02407 274 Gene3D - 40 274 - -
Spst1g02407 274 PANTHER CHITINASE-RELATED 30 272 - -
Spst1g02407 274 Pfam Chitinase class I 36 268 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst1g02407 274 Gene3D Endochitinase, domain 2 119 177 - -
Spst1g02407 274 CDD chitinase_GH19 37 268 - -
Spst1g02407 274 ProSitePatterns Chitinases family 19 signature 2. 181 191 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst1g02407 274 PIRSF Endochitinase 14 274 IPR016283 GO:0004568|GO:0005975
Spst1g02407 274 SUPERFAMILY Lysozyme-like 33 274 IPR023346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02407 Spst-Chr1 32648373 32649583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02407 32 274 Glycoside Hydrolase AT4G01700 74.897 7.25e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02407 - - gmx:100784196 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02407 1 32648373 32649583 Spst10g01851 10 18751552 18752844 PCT