Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01851 ATGCCTTACTCAGCAGTCTTCTTTCTCCCAAAACAAAAGCCAATTTTGAATTTGACCCTTTTTTGTTTAACAATGGCACCCTCATTCTCCTCTATGGCTGTCTTTCTCTCCACCTTCATATTCTGCTTTGCCATTCTTCTTCACTCCTTGTCTTTGGGAGCTGAAGCTCGTATTTCACCCGTTTCTTCTCTCGTTAGCCAACAACTTTTTGATTCCATTTTCCTACACAAAGATAACGCTGCATGCCCCGCTAAAAACTTCTACAACTATGATTCCTTCATCATGGCATCCAAAAGCTTCCCTCAATTTGGTTCTAGTGGTAGTTTAGTCACACGCAAACGTGAGATTGCTGCGTTTCTTGCTCAAATTTCGCATGAAACCACAGGTGGGTGGGCTACTGCACCTGATGGACCCTATGCTTGGGGATTGTGTTTCAAGGAAGAAGTTAGTCCACAAAGTGACTATTGTGATTCCACCAACCAACAATGGCCTTGTTACCCAGGAAAAACTTACAAAGGCAGAGGACCAATTCAACTTTCATGGAACTACAACTATGGGCCAGCAGGGAAGGCCTTGGGATTTGATGGATTGAGGAACCCTGATGTGGTGTCAAACAATTCATTGATTGCCTTTAAAACAGCTCTATGGTTTTGGATGACAGAGCAAAAGCCAAAACCTTCTTGTCACAATGTGATGATTGGAAAATATGTGCCAACTCAAGCTGACATAGCAGCTAATCGAACTGCAGGGTATGGCCTAGTCACTAACATCATCAATGGTGGACTTGAATGTGGAATTCCTGATGATTCAAGGGCTAATGATCGTATTGGATACTTCAAAAGATATGCAACCTTGTTTAACGTAGACACAGGACCTAGCTTGGATTGTGCATATCAGAAATCATTTTAA 909 0.4224 MPYSAVFFLPKQKPILNLTLFCLTMAPSFSSMAVFLSTFIFCFAILLHSLSLGAEARISPVSSLVSQQLFDSIFLHKDNAACPAKNFYNYDSFIMASKSFPQFGSSGSLVTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEVSPQSDYCDSTNQQWPCYPGKTYKGRGPIQLSWNYNYGPAGKALGFDGLRNPDVVSNNSLIAFKTALWFWMTEQKPKPSCHNVMIGKYVPTQADIAANRTAGYGLVTNIINGGLECGIPDDSRANDRIGYFKRYATLFNVDTGPSLDCAYQKSF 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01851 302 Gene3D - 68 302 - -
Spst10g01851 302 PANTHER CHITINASE-RELATED 59 300 - -
Spst10g01851 302 CDD chitinase_GH19 65 296 - -
Spst10g01851 302 SUPERFAMILY Lysozyme-like 61 302 IPR023346 -
Spst10g01851 302 ProSitePatterns Chitinases family 19 signature 2. 209 219 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst10g01851 302 Pfam Chitinase class I 64 296 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst10g01851 302 FunFam Endochitinase (Chitinase) 147 205 - -
Spst10g01851 302 PIRSF Endochitinase 22 302 IPR016283 GO:0004568|GO:0005975
Spst10g01851 302 Gene3D Endochitinase, domain 2 147 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01851 Spst-Chr10 18751552 18752844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01851 39 302 Glycoside Hydrolase AT4G01700 69.925 7.24e-147 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01851 - - vra:106754841 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01851 10 18751552 18752844 Spst10g01851 10 18751552 18752844 ECH
Spst1g02407 1 32648373 32649583 Spst10g01851 10 18751552 18752844 PCT