Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02358 ATGGGGACTGAAAATCCTGGTCGTCCAACCTTCCCTTCAAGGCCTTCTCCACCGCCTTTTGCTGCTGCTCAGACAGTGTCACCTTTTTCATCAACCGGTCCCGTTTCTGGATCAGAGCCTCCTTCTCTGCGGCCTGGTCCTCCGCCGCAAGCTGCCACGCCATTTTCCTCACCCGGACCTGCTGCAGTTAGACCAGGGGGACCCAGTTTTAGACCTGCACCACCGGCGAGGTTCAATGATCCATCAGTGCCTCTTCCTCCTCAATCATCCAATGCCCCGCCGGCTGCTGGACCTTTTCAGCAGTTTCCGCCACCGCCCTTTCCCCCGACAATGCAGACACGTGCTCCTCCGCCGCCTATGGGACAACCATCAATTAAATCTTCACCTAGTCAAGCACCGCCTTTTACCACGTCTCTTCCAGCTCAGCCACCGATGCCTTTTGTTCCAATGGGCTCTCCCCCACCTCAAAGTGCTGTTCCTGCGCATTTAGGTTCAAATGTTCCTCCACCTACATTTCAGCCATCATTTCCTGGGTACCCGAGTAAGCAGACTGGCCCTGAAATGCAAGGTCCACCTATTCATTCCTCTTTCCCTACTAATCAAGGAAATTTTGGGCCTGTTCCGCCTGTTGGAGCTTCTCCTTTTTTGTCTCATCAAGGAGGTTATGCCCCTTCACCCCCAGTGGCTCCTACGCTAGGTCTACAGCCAATGCAGCAGCCAGGATCTGCACCCTCGATGGGTACCGTTCAGGGCTTGGCAGAAGACTTTAATGCCCTCACAATGCAAACTCGTCCTGGAACAATGGATCCATTATTTGACGCCAAAGAACTTCCAAGGCCATTGGAAGGAGACGTTGAGCCAAAGAATTTGGTTGACATGTATCCCATGAACTGCAATCCCGGCTTCCTACGACTCACAACCAGTGCCGTACCTAGCTCCCAGTCCTTGGCTTCAAGGTGGCACCTTCCTCTTGGTGCAGTTGTATGTCCGCTTGCTGAACCTGCTGATGGGGAAGAGGTTCCCATAGTTAATTTTGCCCCAGCTAGTGTTGTTCGCTGCAGAAGATGTCGCACATACGTGAACCCTTATATGACATTTACAGAAGCAGGAAGAAAGTTTCGCTGCAATGTCTGTACCTTGCTTAATGATGTTCCTACCGAGTATTTTGCACAATTAGATGCAACTGGAAAAAGAGTTGATATAAATCAACGACCTGAGCTTACAAAGGGGACTGTAGAATTTGTTGCTCCTGCTGAGTATATGGTGCGGCCTCCTATGCCACCAGTGTATTTCTTCCTCATCGATGTTTCCATATCTGCAGTTAGAAGTGGGATGATTGAGGTTGTGGCCAATACAATTAAGTCATGCTTAGATGAGCTACCTGGCTTTCCACGGACGCAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGTCTTCCCTGACTCAACCCCAGATGTTGGTAGTGTCAGATCTGGATGATATATTTATTCCGCTGCCAGATGATCTTCTTGTTAATTTGTCTGAATCAAGAAGTGTTGTAGAAAGCTTCCTAGATTGTTTACCAACCATGTTCCAGGACAATGTTAACTTGGAATCAGCTTTTGGTCCTGCTCTTAAGGCTGCATTCATGGTTATGAGTCAACTTGGAGGGAAATTGTTAATATTTCAAAACTCCCTCCCATCTCTTGGTATTGGCCGCTTGAAGTTACGTGGAGATGATTCTCGTGTTTACGGGACAGACAAAGAACATGGACTGAGACTGCCTGAAGATCCATTCTATAAACAAATGGCTGCTGAGTTTTCCAAGTACCAAATATCAGCAAATGTTTATGCATTCAGTGACAAGTACACAGATGTAGCATCCTTGGGAACTCTGGCAAAGTATACTGCTGGTCAAGTGTATTACTATCCCGCTTTCCAATCAGCTATCCATGGGGATAAATTGAGTCATGAATTAAGGAGGGACCTTACCAGAGAGACCGCATGGGAAGCTGTAATGCGTATTAGATGTGCAAAAGGTGTTCGCTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACAGATTTGTTAGCACTTCCTGCTGTAGATTGTGATAAAGCCTTTGCTATGCAGTTATCACTTGAAGAGACATTATTGACAACTCAGACAATATATACAGCTTCTTGTGGTGAAAGGCGAATAAGAGTACACACAATGGCAGTTCCAGTAGTTACAGAGCTGGCAGATATATATCGCCTGGCTGATACTGGTGCAATTGTATCACTGTTAAGTAGGCTAGGTAGTTCCCTTATAATTGCAGCAACTGAGAAAACATTATCCCAAAAACTGGAAGATGCACGGACTTCAGTTCAACTAAGAATAGTGAAAGCCCTAAGGGAATATCGGAATCTTTATGCTGTGCAACATCGGTTGGCCAACAGAATGATATATCCTGAGTCCCTGAAGTTCCTAATTTTGTATGGATTGGCCCTTTGTAGATCAACAGCTCTACGTGGAGGATATGGTGATGTAGCACTGGATGATCGATGTGCAGCAGGACACATAATGATGACTGTATCAATAAAAAGACTGTTGAAACTTCTCTATCCTAGTTTGATTCGACTTGATGAATATCTTTTGAAGGCATCTGTACAGGCTGATGACTTAAAAAGTGTTGAGAAAAGGTTACCTTTGACCGGGGAGAGCTTAGATTCTAGGGGCCTTTATTTGTATGATGATGGCTTCCGGTTCATTATATGGTTTGGTAGGGTGATTTCACCTGATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAATTATCGAAGACTACTCTAGATGAGCATGGCAATGAAATGTCAAGGAGACTGATGAAAGTACTTGAGAAGTTCAGAAATACAGATCGTGCATATTACCAGTTGTGCCATCTTGTGAGGCAAGGTGAACAGCCCAAAGAAGGATTCCTCCTTCTTGCAAACCTTGTTGAGGACCAGATGGGTGGTAATAGTGGGTATGCTGAATGGATGTTACAGATATCCCGGCAAGTGCAGCAATCATAA 3063 0.4561 MGTENPGRPTFPSRPSPPPFAAAQTVSPFSSTGPVSGSEPPSLRPGPPPQAATPFSSPGPAAVRPGGPSFRPAPPARFNDPSVPLPPQSSNAPPAAGPFQQFPPPPFPPTMQTRAPPPPMGQPSIKSSPSQAPPFTTSLPAQPPMPFVPMGSPPPQSAVPAHLGSNVPPPTFQPSFPGYPSKQTGPEMQGPPIHSSFPTNQGNFGPVPPVGASPFLSHQGGYAPSPPVAPTLGLQPMQQPGSAPSMGTVQGLAEDFNALTMQTRPGTMDPLFDAKELPRPLEGDVEPKNLVDMYPMNCNPGFLRLTTSAVPSSQSLASRWHLPLGAVVCPLAEPADGEEVPIVNFAPASVVRCRRCRTYVNPYMTFTEAGRKFRCNVCTLLNDVPTEYFAQLDATGKRVDINQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVANTIKSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFIPLPDDLLVNLSESRSVVESFLDCLPTMFQDNVNLESAFGPALKAAFMVMSQLGGKLLIFQNSLPSLGIGRLKLRGDDSRVYGTDKEHGLRLPEDPFYKQMAAEFSKYQISANVYAFSDKYTDVASLGTLAKYTAGQVYYYPAFQSAIHGDKLSHELRRDLTRETAWEAVMRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTIYTASCGERRIRVHTMAVPVVTELADIYRLADTGAIVSLLSRLGSSLIIAATEKTLSQKLEDARTSVQLRIVKALREYRNLYAVQHRLANRMIYPESLKFLILYGLALCRSTALRGGYGDVALDDRCAAGHIMMTVSIKRLLKLLYPSLIRLDEYLLKASVQADDLKSVEKRLPLTGESLDSRGLYLYDDGFRFIIWFGRVISPDIAKNLLGADFAAELSKTTLDEHGNEMSRRLMKVLEKFRNTDRAYYQLCHLVRQGEQPKEGFLLLANLVEDQMGGNSGYAEWMLQISRQVQQS 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02358 1020 Gene3D Severin 870 998 IPR029006 -
Spst1g02358 1020 MobiDBLite consensus disorder prediction 23 38 - -
Spst1g02358 1020 Gene3D - 298 743 - -
Spst1g02358 1020 Pfam Sec23/Sec24 helical domain 772 865 IPR006900 GO:0006886|GO:0006888|GO:0030127
Spst1g02358 1020 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 879 1019 IPR036180 -
Spst1g02358 1020 Pfam Sec23/Sec24 zinc finger 351 388 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Spst1g02358 1020 Pfam Sec23/Sec24 beta-sandwich domain 667 744 IPR012990 -
Spst1g02358 1020 Gene3D - 296 409 - -
Spst1g02358 1020 MobiDBLite consensus disorder prediction 40 55 - -
Spst1g02358 1020 Pfam Gelsolin repeat 894 947 IPR007123 -
Spst1g02358 1020 SUPERFAMILY vWA-like 425 665 IPR036465 -
Spst1g02358 1020 Pfam Sec23/Sec24 trunk domain 425 661 IPR006896 GO:0006886|GO:0006888|GO:0030127
Spst1g02358 1020 MobiDBLite consensus disorder prediction 1 137 - -
Spst1g02358 1020 SUPERFAMILY beta-sandwich domain of Sec23/24 183 753 - -
Spst1g02358 1020 Gene3D von Willebrand factor, type A domain 427 664 IPR036465 -
Spst1g02358 1020 SUPERFAMILY Zn-finger domain of Sec23/24 341 424 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Spst1g02358 1020 PANTHER SEC24-RELATED PROTEIN 91 1017 - -
Spst1g02358 1020 Gene3D Sec23/Sec24 helical domain 744 1017 - -
Spst1g02358 1020 CDD Sec24-like 425 666 IPR041742 GO:0006886|GO:0006888|GO:0030127
Spst1g02358 1020 FunFam protein transport protein Sec24D isoform X1 427 664 - -
Spst1g02358 1020 SUPERFAMILY Helical domain of Sec23/24 770 869 IPR036175 GO:0006886|GO:0006888|GO:0030127
Spst1g02358 1020 MobiDBLite consensus disorder prediction 65 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02358 Spst-Chr1 32207379 32215374 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02358 K14007 - gmx:100791083 1773.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02358 1 32207379 32215374 Spst10g01792 10 18278532 18286919 PCT