Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01792 ATGGGGACAGAAAACCCTGCTCGTCCAACCTTCCCTTCAAGACCACCCTTTGCTGCTGCACAGGGTATGACACAATTTTCGTCAACAGGTGCTATGGTTGGATCAGAGCCTCCTTCTTTTGTACCTACTACTCCGGCTCCTCCCTTGGCATCCACGCCATTTTCATCATATGGACCTTCGGTTCAACACGGTGTGCCTAGTTATAGACCTGCGCCACTGGGCCAGTTTAATGACCCCTCAGTGCCTCCTCCTCCTTCCAATTTCCCACCTGCTGGTGGACCTCTCCAGCGTTTCCCAATGCCACAGTTCTCCTCAAATGGTCAAGCACCTTCCCTGCATGCTCCACCCATGGGACAACCAACAATTCAACCTTCTGCGGGTCAAACACAGTCTTTTCCGGCTTCTCTTCAGCCTCAGCCGCAAATGCCTTTTGTTTCAATGGGGTCTCCCTCTCCTGCATTTCCAGGATCGAATGTTCCTCGTCCTGTCTTTCATCCATCTTTTCCTGGATATCCGCAGAAACAGGCTGGTGCAGAAATGCAAGCTCCCTCTATGCATTCCTCTCACCCTTCAAATCAAGGAAACTATGGGCCTGTACCACCTTCGCCTTTTCAACCTCACCAAGGTTATGTTTCGCAGCCCCCAATGGCTGCTCCGTTAGGCGTCCAGCCCATGCAATACCCAGGAGCTGGGCCGCCTATAGGTTCCATTAATGGCTTGCCAGAAGACTTCAATTCGCTATCAATTCAAACTCGTCCTGGACTCATGGAGTCGTACGTTGATGCTAAAGAATTGCCAAGGCCATTGGACGGTGATGAGGAGCCAAAGTCTTTAGATATGTATCCCATGAACTGCAATCCTAGATATCTACGACTCACAACCAGTGGAATGCCTAACACCCAGTCCTTATGTTCAAGGTGGCATCTTCCACTTGGAGCAGTTGTATGTCCGCTTGCAGAGTCTCCTGATGCGGAAGAGGTACCAATAGTTAATTTTGCTGCAACTGGTATCGTACGCTGTAGGAAATGCCGCACATATGTAAATCCATATGTGAAATTTACTGAAGGCGGAAGAAAGTTCCGGTGCAACACCTGCTCCTTGCTTAATGACGTTCCAAGTGAATATCATGCACAATTAGATGCCAGTGGCAGAAGAGTTGATTTGAATCAAAGACCTGAGCTTACAAAGGGTACTGTAGAATTTGTTGCCCCAGCAGAGTATATGGTGCGGCCTCCTATGCCTCCAGTATATTTCTTCCTCATTGATGTTTCCATATCTGCAGTTAGAAGTGGAATGATTGAGGTTGTGGCCCAAACAATAAGGTCATGCTTAGATGAGCTGCCTGGCTTTCCCCGAACACAAATAGGGTTTGCGACTTTTGACAGCACAATACATTTTTATAACATGAAGTCATCCTTGACTCAACCACAGATGTTGGTGGTCTCAGATTTGGATGACATATTTGTTCCCCTGCCAGATGATCTCCTTGTCAACTTATCAGAATCAAGAAGTGTGGTGGAAACATTTCTTGATAGTCTACCATCCATGTTCCAGGACAACCTGAATCTGGAATCTGCTTTTGGTCCTGCTTTGAAGGTTGCCTTTATGATCATGAGTCAACTTGGAGGAAAATTGTTAATTTTTCAAAACAGTCTCCCTTCTCTTGGTGTTGGTCACCTGAAACTTCGTGGAGATGATTCTAAAGTTTATGGCACAGATAAAGAACATATGTTAAGATTGCCAGAAGATCCCTTTTACAAGCAAATGGCTGCTGAGTTTTCTAAATACCAGATCTCAGTGAATGTGTATGCATTCAGTGATAAGTACATTGACATAGCATCCCTTGGAACCTTGGCAAAGTATACTGCTGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGTCATTCACGGGGAGAAACTAAGGAATGAGCTAAGGAGAGACCTTACCAGAGAAACTGGCTGGGAAGCTGTACTGCGAATTAGATGTGCAAAGGGTGTCCGTTTCACAACTTATCATGGAAACTTTATGCTAAGGTCCACAGATTTATTAGCACTTCCAGCTGTGGATTGTGATAAAGCCTTTGCCATGCAGTTATCTCTCGAAGATACATCATTGAAAACTCAGACAATGTATTTCCAAATATCTGTTACTGTTATGCTTGTTATTCAGTTAAGGTATACTGCATCCTGCGGTGAAAGGCGTATCAGAGTACATACAGCAGGAGCTCCAGTAGTTACAGACTTGGTAGATATGTATCGCTTGGCTGATACTGGTGCAATTTTATCTCTGTTTAGTAGGCTAGCAATTGAGAAAACGTTGTCCCATAAACTGGAAGAAACCCGGAGTGCTGTACAACTAAGAATTGTGAAAGCCCTCCGAGAATATCGAAATATCCATGGTGTGCAACATCGCTCGGTGAATAGGATGATATATCCTGAGTCATTAAAGTTCCTACCCTTGTATGGCTTAGCACTTTGTAGATCAGCACCTCTCCGTGGTGGGTATGGGGATGTTCCACTAGATGAACGGTGTGCAGCAGGACACACAATGATGACCCTACCTATAAAGAGGATGTTGAAACTTCTCTATCCTAGTTTGCATCGACTTGATGAATATCTTCTAAAGGCTGATGACTTGAAAATCTTTGATAGAAGGTTACCTTTGGCTGGGGAGAGCTTGGATTCTAGGGGCCTTTATATATATGACGATGGCTTCCAGTTCATTATATGGTTTGGTAGAGTGATTTCACCTGACATAGCTAAGAATTTACTTGGATCTAACTTTGCAGCAGAGTTATCAAAGGTTACTCTAAATGAGAATGAGAATGAGAATGATAATGAAATGTCTAAGAGGCTGATAAAGGTACTTGAGAAGTTCAGAAGTACTGACCGTGCATATTACCAGTTGTGCCACCTTGTGAGGCAAGGTGAACACCCCAGAGAAGGATTCATTTTTCTTTCAAACCTGTTTGAGGACCAGATGGGTGCTAATAAGGGATATGCTGATTGGATAATACAGATTTCCCGACAAGTGCAGCAATGA 3045 0.4443 MGTENPARPTFPSRPPFAAAQGMTQFSSTGAMVGSEPPSFVPTTPAPPLASTPFSSYGPSVQHGVPSYRPAPLGQFNDPSVPPPPSNFPPAGGPLQRFPMPQFSSNGQAPSLHAPPMGQPTIQPSAGQTQSFPASLQPQPQMPFVSMGSPSPAFPGSNVPRPVFHPSFPGYPQKQAGAEMQAPSMHSSHPSNQGNYGPVPPSPFQPHQGYVSQPPMAAPLGVQPMQYPGAGPPIGSINGLPEDFNSLSIQTRPGLMESYVDAKELPRPLDGDEEPKSLDMYPMNCNPRYLRLTTSGMPNTQSLCSRWHLPLGAVVCPLAESPDAEEVPIVNFAATGIVRCRKCRTYVNPYVKFTEGGRKFRCNTCSLLNDVPSEYHAQLDASGRRVDLNQRPELTKGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIRSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPSMFQDNLNLESAFGPALKVAFMIMSQLGGKLLIFQNSLPSLGVGHLKLRGDDSKVYGTDKEHMLRLPEDPFYKQMAAEFSKYQISVNVYAFSDKYIDIASLGTLAKYTAGQVYYYPAFQSVIHGEKLRNELRRDLTRETGWEAVLRIRCAKGVRFTTYHGNFMLRSTDLLALPAVDCDKAFAMQLSLEDTSLKTQTMYFQISVTVMLVIQLRYTASCGERRIRVHTAGAPVVTDLVDMYRLADTGAILSLFSRLAIEKTLSHKLEETRSAVQLRIVKALREYRNIHGVQHRSVNRMIYPESLKFLPLYGLALCRSAPLRGGYGDVPLDERCAAGHTMMTLPIKRMLKLLYPSLHRLDEYLLKADDLKIFDRRLPLAGESLDSRGLYIYDDGFQFIIWFGRVISPDIAKNLLGSNFAAELSKVTLNENENENDNEMSKRLIKVLEKFRSTDRAYYQLCHLVRQGEHPREGFIFLSNLFEDQMGANKGYADWIIQISRQVQQ 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01792 1014 Pfam Sec23/Sec24 helical domain 757 860 IPR006900 GO:0006886|GO:0006888|GO:0030127
Spst10g01792 1014 MobiDBLite consensus disorder prediction 180 195 - -
Spst10g01792 1014 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 874 1014 IPR036180 -
Spst10g01792 1014 Gene3D - 283 396 - -
Spst10g01792 1014 MobiDBLite consensus disorder prediction 121 140 - -
Spst10g01792 1014 FunFam protein transport protein Sec24D isoform X1 414 651 - -
Spst10g01792 1014 MobiDBLite consensus disorder prediction 170 246 - -
Spst10g01792 1014 SUPERFAMILY vWA-like 412 652 IPR036465 -
Spst10g01792 1014 Gene3D Sec23/Sec24 helical domain 746 1012 - -
Spst10g01792 1014 MobiDBLite consensus disorder prediction 1 140 - -
Spst10g01792 1014 Gene3D Severin 865 993 IPR029006 -
Spst10g01792 1014 MobiDBLite consensus disorder prediction 76 96 - -
Spst10g01792 1014 Pfam Sec23/Sec24 beta-sandwich domain 654 745 IPR012990 -
Spst10g01792 1014 Pfam Sec23/Sec24 zinc finger 337 375 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Spst10g01792 1014 SUPERFAMILY Zn-finger domain of Sec23/24 327 411 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Spst10g01792 1014 Gene3D von Willebrand factor, type A domain 414 651 IPR036465 -
Spst10g01792 1014 PANTHER SEC24-RELATED PROTEIN 101 1012 - -
Spst10g01792 1014 SUPERFAMILY beta-sandwich domain of Sec23/24 175 755 - -
Spst10g01792 1014 Pfam Sec23/Sec24 trunk domain 412 648 IPR006896 GO:0006886|GO:0006888|GO:0030127
Spst10g01792 1014 SUPERFAMILY Helical domain of Sec23/24 757 864 IPR036175 GO:0006886|GO:0006888|GO:0030127
Spst10g01792 1014 MobiDBLite consensus disorder prediction 20 34 - -
Spst10g01792 1014 Gene3D - 285 745 - -
Spst10g01792 1014 CDD Sec24-like 412 653 IPR041742 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01792 Spst-Chr10 18278532 18286919 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01792 K14007 - gmx:100791083 1557.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02358 1 32207379 32215374 Spst10g01792 10 18278532 18286919 PCT