Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02333 ATGAGTTCTTCGCTACCTCAAGTTCCCAACAAGAAAACAATGTGGCTGCACCCAAAGGTTTTGGGTTTCAATCCTTCTGAAAGATGGGGGCACTCTGCTTGCTTCTCCAAGGGCCTTATGTATGTCTTTGGGGGTTGCTGTGGGGGGTTGCATTTTTGCGATGTTCTCACTTTGGACCTTAACAAAATGGTTTGGAGCAAGCTTACTACTACGGGTGAGAAGCCAGGGCCTAGAGATAGCCATAGTGCTGTTCTTGTGGGGCATAAAATGATAGTGTTTGGTGGCACAAATGGCTTTAAGAAGGTGAATCACATTCACATACTTGATCTTGTTACCAAAGAGTGGGTTCGACCTGAATGTAAAGGGACTCCTCCTTCTCCACGAGAAAGCCATACTGCCACGCTGGTTGGTGATGAAAGGATAGTGATATTTGGTGGTAGCGGAGAAGGCCATGCTAACTATTTAAATGATCTGCATATTCTTGATCTTCGAACCATGAGCTGGACTTCCCCTGAGTTGAAAGGCGAATTGCCTGTCCCCAGGGACAGTCATAGTACCCTTGCAATCGGGAACAGGCTTATTGTGTATGGTGGAGATTCTGGTGATCAGTATCATGGCAATGTTCACGTGCTTGATATGGCTACAATGACTTGGTCCAGATTGACGATTCAAGGTTCTCCACCAGGAGTCAGGGCAGGTCATGCCGCAGTAAACATTGGAACAAAGGTATATATCATTGGAGGAGTTGGAGACAAACGTTACTATAATGATGTTTGGATCTTTGATATCTGCAATTTTTCATGGACTCAACTTGATATACATTTTCAACAGCCACAAGGGCGATTTTCTCATACAGCTGTTGCTGCAGGCATGGATATTGCAATATATGGCGGGTGCGGGGAAGATGAACGTCCACTCAATGAATTGTTAGTTTTGCAGCTTGCAGCAGAGCATCCAAATGGACGTTACTGCGTTCCCATGCGCAAACCTGTTGGAACATATTGGAATCAAGAAAATAATATTATCCCAGCAGAAGCGGATACCAACTCGAAATCTATCCTTGTGAGGAATAATGTGGAAGCTTTTGGAAATGGAGCTTATGAAATTGCATCAGAAAAATCGTCACCTTATCACTTTGATTCAGGTACTTCACGACAGAAGAGGAGGAGAGTTGCTGCTGCAAAGATGTGGGATGTTGAATCAGAACAAGAAGATTGTTTTCTTTCATTGTCCCTTCATTCATCTCCATATCAATCCGATCAAGAACAGACCCCAAGTCAAAAGGCAAATACATTATTTCCAACCACTTCCCAACACGAAAAAGACTCGAGTTATAAGAGAAATTTGAAGAATATCCCACTTAAAACTCCACAAGCTCTTCATTTCCTACAACATCAACAAAAACAAGAACAATGTCTTCATGTTAATGAGGATAGAAGAAGAGCTCAACATGAGGCTGCAGAGCAGAAACCAATGATGCGACCCATTCAACACCTGATTGGTGCTGAAGTTCGGGAGAGAGTTGAAGGACCCTTTGACTCAGTTTCGCTATCTCCTGCAGCTGTGAATGGAAGGATTTTCCGGGGAGTCATATTTACACCTGGATCAGGAGTTGTCTCAAAGGGGGCCAGTGTTAAACCAACTTATCCTCGATCAAGTTCACTTCCTTCCTCTCAATCATTTTTGGGTGCTTTAAGGGCTTCTCAAGAGGTACCTATGTGTTTGCATGCAGAGCCATACCATGGTTCACGATCATGGCAAAACCCAGTGGCTTTACCATTTCCAATCATGGGAGCCAGTCCTAGTGTTGTTTCCAAGGAGCATAAAATCAGAAGTGATCTTCAAGGGTTGGCTCTAACACTTGGAGGCCCTGCTAGTGGAAATCCTCAGGTAAAATATTGA 1902 0.438 MSSSLPQVPNKKTMWLHPKVLGFNPSERWGHSACFSKGLMYVFGGCCGGLHFCDVLTLDLNKMVWSKLTTTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNHIHILDLVTKEWVRPECKGTPPSPRESHTATLVGDERIVIFGGSGEGHANYLNDLHILDLRTMSWTSPELKGELPVPRDSHSTLAIGNRLIVYGGDSGDQYHGNVHVLDMATMTWSRLTIQGSPPGVRAGHAAVNIGTKVYIIGGVGDKRYYNDVWIFDICNFSWTQLDIHFQQPQGRFSHTAVAAGMDIAIYGGCGEDERPLNELLVLQLAAEHPNGRYCVPMRKPVGTYWNQENNIIPAEADTNSKSILVRNNVEAFGNGAYEIASEKSSPYHFDSGTSRQKRRRVAAAKMWDVESEQEDCFLSLSLHSSPYQSDQEQTPSQKANTLFPTTSQHEKDSSYKRNLKNIPLKTPQALHFLQHQQKQEQCLHVNEDRRRAQHEAAEQKPMMRPIQHLIGAEVRERVEGPFDSVSLSPAAVNGRIFRGVIFTPGSGVVSKGASVKPTYPRSSSLPSSQSFLGALRASQEVPMCLHAEPYHGSRSWQNPVALPFPIMGASPSVVSKEHKIRSDLQGLALTLGGPASGNPQVKY 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02333 633 SUPERFAMILY Kelch motif 71 315 IPR015915 GO:0005515
Spst1g02333 633 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 14 482 - -
Spst1g02333 633 Gene3D - 12 119 IPR015915 GO:0005515
Spst1g02333 633 Pfam Galactose oxidase, central domain 87 135 - -
Spst1g02333 633 Pfam Galactose oxidase, central domain 139 189 - -
Spst1g02333 633 Pfam Galactose oxidase, central domain 39 85 - -
Spst1g02333 633 Pfam Kelch motif 231 271 IPR006652 GO:0005515
Spst1g02333 633 Gene3D - 120 368 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02333 Spst-Chr1 31952016 31955940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02333 111 314 Acyl Lipid Metabolism Gene Families AT3G05420 33.641 7.08e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02333 K20285 - gmx:100796366 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02333 1 31952016 31955940 Spst1g02333 1 31952016 31955940 ECH
Spst1g02333 1 31952016 31955940 Spst10g01768 10 18083085 18086794 PCT