Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02306 ATGACTTCTTTGAGCCGAGAATTAGTGTTTCTGATACTTCAATTCTTGGAGGAGGAGAAGTTCAAGGAGTCGGTGCACAGGCTTGAGAAAGAGTCTGGGTTTTTCTTCAATTTGAAGTACTTTGAGGAGAAAGTACTGGCTGGTGAATGGGAAGAAGCTGAGAAGTACTTAACAGGGTTTACTAAAGTTGATGATAATAGATATTCCATGAAAATGTTCTTTGAAATCAGGAAGCAGAAATATCTGGAAGCACTTGATAGGAAAGACAAGACAAACGCTGTTGAGATATTAGTGGGTGATTTAAAAATTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACTCAGTTATTAACTCTTAGTAATTTCAGGGAGAATGAGCAGTTGTCCAAGTATGGTGACACCAAAACTGCTCGCAGGATCATGTTGGTAGAGCTAAAAAGACTCATAGACGCAAATCCTCTTTTCCATGACAAACTTATCTTCCCTACCCTAAGGTCATCAAGATTGCGAACGTTGATCAATCAAAGTTTAAACTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCAGATATAAAGACTTTATTCATGGACCACACATGTACACCTCCTAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCAATTGCTTCCATTGGAAAGCCTGCAGCTTATACATCAATCGGAGCTCATGGTCCCTTTCTGCCTGCTGCAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTTACACCATCAGGAATACCTGTCCCGCAGAATCAAGTGTCTATCTTGAAGCATGCAAGAACACCTCTGACAACTCCTGGCATAGTTGATTATCAGAATGCTGATCATGAACAGTTAATGAAAAGACTCCGGCCTGCTCCTTCTTTTGAGGAGGTTTCCTATCCTCCTGCCCGACATTCCTCTGGGTCAGTTGATGATCTACCAAGAACAGTGGCAATGACATTGCATCAAGGGTCCTCTGTGACAAGCATGGACTTTCATCCTTCTCACCAATCCTTACTTCTAGTTGGTTCTAATAATGGTGAAATTACACTTTGGGAACTTGGGTTGCGAGACAGGTTGGTCGTAGAGCCATTCAATATATGGGATATTTCAGTGTGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATGCACCTATTTCTGTCAGCTGTGTCACATGGAGCCTGGATGGAGATTTTGTGGGTGTTGGATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGCTGACTCAGCGTATAGAGGTTGATGCCCACATTGGTGGTGTTAATGACTTGGCATTTGCTCATCCAAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTGACTGGACGGAAACTATTTAACTTTGAGGGGCACAAGGCACCTGTATATTCTATCTGTCCTCATCAAAGGGGTAAAATTAAGTTTGTATTTTCAACTGCCATTGATGGCAAAATTAAAGCCTGGTTGTACGATAATATGGGCCCTAGGGTTGACTATGATGCCCCGGGCTATTGGTGTACCACATTGCTCTATAGTGGTGATGGAAGTAGATTGTTTTCCTGCGGGACTAGTAAAGATGGAGAGTCATTTCTTGTTGAATGGAATGAGACTGAAGGATCTATAAAGAGAACATACAATGGGTTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTTGACACAACTCAAAATCGCTTCTTGGCTGCTGGTGAAGAAGGCCAAGTCAAATTTTGGGAGATGGACAATACTAATCTTCTAACAAGCACTGACGCAGAGGGTGGATTACAGGCCCTTCCACTCTTGAGATTCAACAAGGAAGGAAATCTTCTTGCTGTCACTACTGCAGACAATGGATTCAAAATTCTTGCTAATGTTAGTGGTCTTAGATCCTTGAGAACAGTTGAAACTCCACGATTTGAAGCATTGAGGTCACCTATTAACTCTGCTGTAATCAAGGCATCTGGCTCTTCTGCTGTTAATGTTACTCCTGCCAACTGTAAAGTAGATAGGAGCTCACCTGTCAGGCCTTCTCCAATTCTAAATGGAGGAGTCGATCCCACAGGTCGAAATTCAGAGATACTTAGAGCGGTGGAAGATGGATTAGATAGAGCTAAACCATGGCAGCTGTCTGAAATTGTTGATCCTGTTCAATGTCGGTTAGTTACCATGCCTGACAGTACAGATTCTTCCAGCAAGGTAATTCGACTTTTATATACAAACTCTGGTGCCGGTATATTGGCACTTGGTTCCAATGGTGTTCAGAGGCTCTGGAAGTGGGCTCGTAGTGAACAAAATCCCAATGGGAAGGCAACTGCAAGTGTTGTTCCACAGCATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATGTCTCGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGACTCGTATGTTTTGTCTGCCTGTGGTGGAAAGGCTTCGTTATTTAACATGATGACATTCAAGGTAATGACAACATTTATGCCGCCACCCCCTGCCTCTACCTTTCTGGTTTTCCACCCTCAAGATAACAACATCATAGCCATGGGGATGGAGGATTCAACAATTTACATTTATAATGTTCGAGTGGATGAGGTGAAATCCAAATTGAAGGGTCACCAAAAGCAAATCACTGGTTTTGCCTTTTCAACCTGTCTTAACATCCTAGTTTCATCTGGTGCTGACGCTCAACTTTGTGTATGGAGCATTGATACATGGGAGAAAAGAAAATCAGTTCCTTTACAACTGCCCGCAGGAAAGGCTCCTGTTGGTGATACTCGCGTGCAGTTCCATTTAGACCAAATCCGGTTACTGGTAGCCCATGAGACTCAATTGGCAATATATGACGCCTCAAAGATGGATCGGATTCGGCAGTGGGTTCCTCAAGATGTTCTGGCTGCTCCCATAACATATGCAGCTTATTCCTGCAATAGTCAGTTAATTTATGCTACATTTTGTGATGGCAACACTGGGGTTTTTGATGCCGACAGCTTGAGACTGAGATGTCGTATTGCACCATCCGCATACTTCTCACCTGCGGCTTTAAGTGGGAAGCAATCTGTGTATCCTGTTGTTGTTGCGGCTCATCCAGTAGAGCCCTATCAATTTGCCGTTGGACTGACAGATGGGTCCGTGAAAGTGGTAGAGCCCAGTGAATCAGAAGGTAATTGGGGAACCAGTCCACCCATAGATAATGGAGTAGTGAACGGTAGGACAGCATCATCATCTACAACAAGCAACCACACACCCGATCAGGCACAAAGATAA 3393 0.433 MTSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNLKYFEEKVLAGEWEEAEKYLTGFTKVDDNRYSMKMFFEIRKQKYLEALDRKDKTNAVEILVGDLKIFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARRIMLVELKRLIDANPLFHDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFMDHTCTPPNGPLAPTPVNLPIASIGKPAAYTSIGAHGPFLPAAATANANALAGWMANASASSSVQAAVVTPSGIPVPQNQVSILKHARTPLTTPGIVDYQNADHEQLMKRLRPAPSFEEVSYPPARHSSGSVDDLPRTVAMTLHQGSSVTSMDFHPSHQSLLLVGSNNGEITLWELGLRDRLVVEPFNIWDISVCSLPFQAAMVKDAPISVSCVTWSLDGDFVGVGFTKHLIHLYAYTGSNELTQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRKLFNFEGHKAPVYSICPHQRGKIKFVFSTAIDGKIKAWLYDNMGPRVDYDAPGYWCTTLLYSGDGSRLFSCGTSKDGESFLVEWNETEGSIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEEGQVKFWEMDNTNLLTSTDAEGGLQALPLLRFNKEGNLLAVTTADNGFKILANVSGLRSLRTVETPRFEALRSPINSAVIKASGSSAVNVTPANCKVDRSSPVRPSPILNGGVDPTGRNSEILRAVEDGLDRAKPWQLSEIVDPVQCRLVTMPDSTDSSSKVIRLLYTNSGAGILALGSNGVQRLWKWARSEQNPNGKATASVVPQHWQPNSGLLMTNDVSGVNLDEAVPCIALSKNDSYVLSACGGKASLFNMMTFKVMTTFMPPPPASTFLVFHPQDNNIIAMGMEDSTIYIYNVRVDEVKSKLKGHQKQITGFAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPLQLPAGKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPITYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIAPSAYFSPAALSGKQSVYPVVVAAHPVEPYQFAVGLTDGSVKVVEPSESEGNWGTSPPIDNGVVNGRTASSSTTSNHTPDQAQR 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02306 1130 SMART WD40_4 484 525 IPR001680 GO:0005515
Spst1g02306 1130 SMART WD40_4 528 571 IPR001680 GO:0005515
Spst1g02306 1130 SMART WD40_4 335 374 IPR001680 GO:0005515
Spst1g02306 1130 SMART WD40_4 439 482 IPR001680 GO:0005515
Spst1g02306 1130 SMART WD40_4 397 435 IPR001680 GO:0005515
Spst1g02306 1130 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Spst1g02306 1130 SMART WD40_4 823 859 IPR001680 GO:0005515
Spst1g02306 1130 SMART WD40_4 574 614 IPR001680 GO:0005515
Spst1g02306 1130 SMART WD40_4 905 944 IPR001680 GO:0005515
Spst1g02306 1130 SMART WD40_4 862 902 IPR001680 GO:0005515
Spst1g02306 1130 SMART ctlh 34 92 IPR006595 -
Spst1g02306 1130 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Spst1g02306 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Spst1g02306 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Spst1g02306 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 483 IPR001680 GO:0005515
Spst1g02306 1130 Gene3D - 761 1102 IPR015943 GO:0005515
Spst1g02306 1130 FunFam Topless-related protein 3 731 965 - -
Spst1g02306 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Spst1g02306 1130 Gene3D - 562 692 IPR015943 GO:0005515
Spst1g02306 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 375 IPR001680 GO:0005515
Spst1g02306 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 466 949 IPR011047 -
Spst1g02306 1130 MobiDBLite consensus disorder prediction 1095 1130 - -
Spst1g02306 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Spst1g02306 1130 SMART Lish 4 36 IPR006594 GO:0005515
Spst1g02306 1130 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Spst1g02306 1130 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Spst1g02306 1130 SUPERFAMILY WD40 repeat-like 341 524 IPR036322 GO:0005515
Spst1g02306 1130 Gene3D - 324 561 IPR015943 GO:0005515
Spst1g02306 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1114 IPR027728 GO:0006355
Spst1g02306 1130 MobiDBLite consensus disorder prediction 1091 1130 - -
Spst1g02306 1130 SUPERFAMILY WD40 repeat-like 968 1094 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02306 Spst-Chr1 31772617 31781182 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02306 - - gmx:100808421 2035.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02306 1 31772617 31781182 Spst1g02306 1 31772617 31781182 ECH
Spst1g02306 1 31772617 31781182 Spst10g00017 10 191580 199319 PCT