Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00017 ATGTCTTCTCTGAGCAGAGAATTGGTGTTTCTCATACTCCAGTTTCTGGAGGAAGAGAAATTTAAAGAATCCGTACATAAGCTTGAGAAAGAATCTGGATTCTTTTTCAATATGAAGTACTTTGAGGAAAAGGTGCAGGCCGGTGAGTGGGAAGAGGTTGAGAAGTATTTATCAGGGTTTACCAAAGTTGATGATAATAGATACTCAATGAAAATATTCTTTGAAATTAGGAAACAGAAATATCTGGAAGCACTTGATCGGCAAGACAAGGCAAAGGCGGTTGAGATATTAGCTGGTGATTTAAAAATGTTCTCCACCTTCAATGAGGAGCTGTACAAAGAGATCACACAGTTATTAACTCTTAATAATTTCAGGGAGAACGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGGAGCATTATGCTGATAGAGCTCAAAAAACTCATTGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCCACCCTGAAGTCATCAAGACTGAGAACTTTAATCAATCAAAGTCTAAATTGGCAGCACCAGCTCTGCAAAAACCCAAGGCCAAATCCAGATATTAAGACTTTATTCACAGATCACACATGTGCACCTCCTAATGGTCCTCTGGCACCTACACCTGTCAATCTTCCAATTGCTGCAGTTGCAAAGCCTGCCGCTTATACTTCTCTTGGAGCTCATGGCCCCTTCCCACCTGCTGCTGCAACAGCCAATGCTAATGCTTTGGCTGGTTGGATGGCTAATGCTTCAGCCTCATCATCTGTCCAAGCAGCTGTTGTGACAGCATCAACCATACCTGTTCCACAGAGTCAAGTTTCTATCTTGAAACGTCCTAGAACACCTCCTGCAACTCCTGGCATGGTTGATTATCAGAATCAGAATACTGATCATGAACCTCTGATGAAAAGGCTTCGTCCTGGTCATTCTGTAGAGGAGGTTTCTTATCCCTTGGCTCGACAAGCCTCTTTGTCGCTGGATGATCTGCCAAGAACTGTAACCATGACATTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCATCATACCTTACTTCTTGTTGGTTCAAATAATGGAGAAATTACCCTCTGGGAACTCAGTTTGCGAGAAAAGTTGGTCACAAAGCCATTCAAAATATGGGATGTGTCTGCATGCTCATTACAATTTCAGGCTGCTGCAGTGAAGGACGCACCTATTTCTGTCAGTCGTGTCACATGGAGCCCTGATGGAAGTTTTGTGGGTATTGCTTTTACTAAACATTTGATTCACCTATATTCTTACACTGGATCAAACGAGCTAAACCAGCGTATAGAGGTTGATGCTCATATTGGGGGTGTGAATGACTTGGCATTTGCTCATCCAAACAAACAGCTGTGTATTGTGACATGTGGGGATGATAAGTTGATAAAGGTATGGGATTTAAATGGACGAAAACTATTTAGCTTTGAGGGACACGAAGCACCTGTATATTCCATCTGTCCCCATCACAAAGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCATGGTTATATGACAACATGGGTTCCAGGGTTGACTATGATGCCCCTGGCCAATGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAGGCTATTTTCTTGTGGGACAAGTAAAGAGGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATCAAGAGAACGTACAATGGGTTTAGAAAAAAATCTGCTGGTGTTGTGCAGTTTGACACAACCCAAAACCGCTTTTTGGCTGCAGGTGAAGATGGTCAAGTTAAGTTTTGGGACATGGACAATATTAATCTTGTTATAAGCACTGATGCAGATGGAGGATTGCAGAGCCTTCCACGACTGAGATTCAACAAGGAAGGAAATATTCTGGCTGTTACTACCGCCGATAATGGATTCAAGATACTTTCTAATGCTTCTGGTCTTAGATCTTTAAGAACCATTGAAACTCCAGGATTTGAAGCATTGAGGTCACCCCTTGAATCAACTGCAATTAAGGTATCTGGCTCATCTACTGTTAATGTTAGTCCTGTCAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGAGCCGAAGTGTAGAGAAACCAAGAACTGTGGAAGATGTAATAGATAGAGCTGCTAAACCATGGCAACTATCTGAAATTCTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCTGAAAGCACAGATTCATCCAGCAAGGTTGTTAGACTTTTGTACACAAACTCTGGCGTTGGTATTTTGGCACTTGGTTCAAATGGTACCCAGAAGCTTTGGAAATGGGCTCGCAATGAACAGAATCCTACCGGGAAGGCTACTGCCAATGTTGTTCCTCAGCATTGGCAACCCAACAGTGGTCTTCTCATGACTAATGATATCTCGGGTGTCAACCTTGAAGAAGCTGTCCCTTGCATTGCACTTTCAAAAAACGACTCGTACGTTTTGTCTGCCTGTGGTGGAAAGGTTTCCCTATTTAACATGATGACATTCAAGGTAATGACAACTTTCATGCCTCCACCTCCTGCTTCGACCTTCCTAGCTTTCCATCCCCAGGATAACAACATTATTGCCATTGGGATGGAGGATTCAACCATTCACATCTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAGAAGCGTATTACTGGTTTAGCTTTTTCAACAAATCTTAACATACTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAATTCCAATACAACTCCCAGCAGGAAAGTCACCTGTCGGTGATACACGCGTACAATTCCATTCTGATCAACTTCGTTTATTAGTAGTTCATGAGACTCAGTTGGCAATATATGACGCCTCTAAGATGGAACGCATTCGGCAGTGGGTTCCCCAAGATGTTCTGCATGCCCCCATATCGTATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCTACATTTTGTGATGCCAACATTGGTGTGTTTGATGCTGATAGCTTGAGGCTTAGATGTCGTATTGCACCGTCAATATGCTTGTCACCTGCAGCTTTAAATGGAAGTCCATCTTTGTATCCTCTTGTGGTTGCGGCTCATCCACTAGAACCAAACCAGTTTGCTGTTGGGTTGACGGATGGATCTGTGAAAGTGATAGAACCAAGTGAATCAGAGGGTAAATGGGGGTCCTCCCCACCTATGGACAATGGAATATTGAATGGTCGGACAGCATCATCATCTACAACCAGCAACCACACTGCTGATCAGGCTCAAAGATGA 3399 0.4287 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILAGDLKMFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQSQVSILKRPRTPPATPGMVDYQNQNTDHEPLMKRLRPGHSVEEVSYPLARQASLSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWELSLREKLVTKPFKIWDVSACSLQFQAAAVKDAPISVSRVTWSPDGSFVGIAFTKHLIHLYSYTGSNELNQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGQWCTTMLYSADGTRLFSCGTSKEGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQVKFWDMDNINLVISTDADGGLQSLPRLRFNKEGNILAVTTADNGFKILSNASGLRSLRTIETPGFEALRSPLESTAIKVSGSSTVNVSPVNCKVERSSPVRPSPILNGVDPMSRSVEKPRTVEDVIDRAAKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYTNSGVGILALGSNGTQKLWKWARNEQNPTGKATANVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVLSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSIPIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLHAPISYAAYSCNSQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALNGSPSLYPLVVAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGSSPPMDNGILNGRTASSSTTSNHTADQAQR 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00017 1132 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Spst10g00017 1132 MobiDBLite consensus disorder prediction 1094 1132 - -
Spst10g00017 1132 Gene3D - 332 387 IPR015943 GO:0005515
Spst10g00017 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 914 949 - -
Spst10g00017 1132 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1116 IPR027728 GO:0006355
Spst10g00017 1132 MobiDBLite consensus disorder prediction 707 729 - -
Spst10g00017 1132 SUPERFAMILY WD40 repeat-like 345 526 IPR036322 GO:0005515
Spst10g00017 1132 SMART WD40_4 337 376 IPR001680 GO:0005515
Spst10g00017 1132 SMART WD40_4 399 437 IPR001680 GO:0005515
Spst10g00017 1132 SMART WD40_4 576 616 IPR001680 GO:0005515
Spst10g00017 1132 SMART WD40_4 1050 1093 IPR001680 GO:0005515
Spst10g00017 1132 SMART WD40_4 1002 1038 IPR001680 GO:0005515
Spst10g00017 1132 SMART WD40_4 825 861 IPR001680 GO:0005515
Spst10g00017 1132 SMART WD40_4 864 904 IPR001680 GO:0005515
Spst10g00017 1132 SMART WD40_4 443 484 IPR001680 GO:0005515
Spst10g00017 1132 SMART WD40_4 907 946 IPR001680 GO:0005515
Spst10g00017 1132 SMART WD40_4 530 573 IPR001680 GO:0005515
Spst10g00017 1132 SMART WD40_4 486 527 IPR001680 GO:0005515
Spst10g00017 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 471 485 IPR019775 -
Spst10g00017 1132 Gene3D - 763 1104 IPR015943 GO:0005515
Spst10g00017 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 385 IPR001680 GO:0005515
Spst10g00017 1132 FunFam Topless-related protein 3 732 967 - -
Spst10g00017 1132 SMART ctlh 34 92 IPR006595 -
Spst10g00017 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 493 IPR001680 GO:0005515
Spst10g00017 1132 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 492 951 IPR011047 -
Spst10g00017 1132 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 911 1100 IPR011044 -
Spst10g00017 1132 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Spst10g00017 1132 SMART Lish 4 36 IPR006594 GO:0005515
Spst10g00017 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 594 625 IPR001680 GO:0005515
Spst10g00017 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 914 955 IPR001680 GO:0005515
Spst10g00017 1132 Pfam WD domain, G-beta repeat 450 484 IPR001680 GO:0005515
Spst10g00017 1132 Pfam WD domain, G-beta repeat 913 946 IPR001680 GO:0005515
Spst10g00017 1132 Gene3D - 409 671 IPR015943 GO:0005515
Spst10g00017 1132 MobiDBLite consensus disorder prediction 1109 1132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00017 Spst-Chr10 191580 199319 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00017 - - gmx:100793575 2139.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00017 10 191580 199319 Spst10g00017 10 191580 199319 ECH
Spst1g02306 1 31772617 31781182 Spst10g00017 10 191580 199319 PCT