Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02280 ATGTTCTTCTCAAACATGCATCTCTTCTTCTTTTTCTTCTCCTTCTCTCTTTTATCCTCTGGACACCCCTCTCTGCAACTCAACAGCACCGCATTCTCACTCTCCTTCCCTCTCACGACACTCCCTCTCTCCACCAACACCACCTCCAAGATGCTACACGACTCTCTCATTGCAAACTCCAACCGCAACAGAAACAACACGCGAGTCACGAGGCCTTCTTCTCCGTATAACTACAAGCTAGCAATCAAATACTCCCTAGGTTTAGTCGTGAACCTTCCCATTGGGACCCCGCCACAGGTTCAGCCTATGCTGTTGGACACCGGAAGCCAACTATCGTGGATTCAGTGTCACAAAAAAGCACCCAAGAGGCCTCCCCCAACGGTGTCCTTTGACCCTTCTCTCTCTTCCACTTTCTCTATTCTTCCCTGCACTCACCCTCTGTGCAAACCCCGAATTCCCGATTTTACCCTCCCCACTTCCTGCGACCAGAACCGCCTCTGCCACTACTCCTACTTCTACGCCGACGGCACCTACGCCGAGGGCAATCTCGTCAGAGAAAAATTCACTTTCTCCCGTTCCCTTTTTACCCCTCCTTTGATCCTCGGCTGCGCCACGGAGTCCACCGACCCTAGGGGCATTTTGGGAATGAACCGTGGACGCCTCTCCTTCGCTTCACAATCCAAAATTACCAAGTTCTCTTACTGCGTCCCCACCCGCGATACCCGACCCGGGTTCACTCCCACCGGGTCGTTTTACCTAGGCGAGAACCCGAATTCTCTCCGGTTTCGGTTTATCGAAATGTTGACTTTTTCTCCTAGTCAACGCATGCCGAATCTTGATCCCTTGGCTTACACCGTTGCCTTGCAGGGGATAAGAATTGGGGGGAGAAAACTAAATATCTCGCCGGCGGTGTTTCGTGCTGACGCAGGCGGATCGGGTCAAACCATGGTTGACTCCGGAACGGACTTTACTTACCTTGTTAACGAGGCTTATAATAAGGTGCGGGCGGAAATAGTGAGGGCTGTGGGGCCCAGAATGAAGAAGGACTACGTGTACGATGGATCTGCGGACATGTGTTTTGATGGGAATGCGGTTGAGATCGAACGGTTGATAGGGGGCATGGTGTTCGAGTTCGAGAAGGGCGTGGAAATAGTGATTCCCAAGGAGAGGGTTCTCGCTGGTGTGGGGGGTGGGGTCCACTGCATTGGAATTGGGAACTCTGATAAATTGGGTGCGGCCAGTAACATCATTGGGAATTTCCACCAGCAGAATTTGTGGGTGGAGTTTGATCTCGCCAATCGCAGAGTGGGTTTCGGTGCGGCTGATTGTAGCAAAGTGGCGCAATAG 1347 0.5219 MFFSNMHLFFFFFSFSLLSSGHPSLQLNSTAFSLSFPLTTLPLSTNTTSKMLHDSLIANSNRNRNNTRVTRPSSPYNYKLAIKYSLGLVVNLPIGTPPQVQPMLLDTGSQLSWIQCHKKAPKRPPPTVSFDPSLSSTFSILPCTHPLCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSRSLFTPPLILGCATESTDPRGILGMNRGRLSFASQSKITKFSYCVPTRDTRPGFTPTGSFYLGENPNSLRFRFIEMLTFSPSQRMPNLDPLAYTVALQGIRIGGRKLNISPAVFRADAGGSGQTMVDSGTDFTYLVNEAYNKVRAEIVRAVGPRMKKDYVYDGSADMCFDGNAVEIERLIGGMVFEFEKGVEIVIPKERVLAGVGGGVHCIGIGNSDKLGAASNIIGNFHQQNLWVEFDLANRRVGFGAADCSKVAQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02280 448 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Spst1g02280 448 PRINTS Pepsin (A1) aspartic protease family signature 94 114 IPR001461 GO:0004190|GO:0006508
Spst1g02280 448 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Spst1g02280 448 FunFam Aspartyl protease family protein 67 250 - -
Spst1g02280 448 Gene3D Acid Proteases 261 447 IPR021109 -
Spst1g02280 448 SUPERFAMILY Acid proteases 89 445 IPR021109 -
Spst1g02280 448 ProSiteProfiles Peptidase family A1 domain profile. 88 439 IPR033121 -
Spst1g02280 448 Gene3D Acid Proteases 56 250 IPR021109 -
Spst1g02280 448 Pfam Xylanase inhibitor C-terminal 283 439 IPR032799 -
Spst1g02280 448 CDD pepsin_A_like_plant 89 443 IPR034161 -
Spst1g02280 448 PANTHER OS07G0603500 PROTEIN-RELATED 47 444 - -
Spst1g02280 448 Pfam Xylanase inhibitor N-terminal 90 243 IPR032861 -
Spst1g02280 448 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 103 114 IPR001969 GO:0004190|GO:0006508
Spst1g02280 448 FunFam aspartic proteinase PCS1 254 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02280 Spst-Chr1 31560393 31561739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02280 48 446 Miscellaneous Gene Families AT1G77480 26.512 2.32e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02280 - - gmx:100803089 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02280 1 31560393 31561739 Spst1g02280 1 31560393 31561739 ECH
Spst8g00335 8 3021219 3022514 Spst1g02280 1 31560393 31561739 PCT