Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02196 ATGGCAGAGTTTGAAAGCAGCAGTAAGAGAGGAGGAAGATGGTGTCTCAATGGAATGACGGCTCTTGTCACCGGCGGCACTCGTGGGATCGGGCACGCCATAGTGAGTGACTTGGCCGCGTTTGGCGCCACCGTGCACACTTGTTCCAGGACCCAAACAGAGCTCCAGAAGTGCTTAGAAGAGTGGCGGAGTGAGGGCTTTCAGGTAACTGGGTCGGTGTGTGACATCACCTCACCACACGACAGAGAGAAGCTCCTTCAAGACGTGACATCAACCTTCAATGGCAAACTCAACATCTATGTAAACAACGTTGGAACAAACTTTAGAAAGCCAACCATTGAGTACAGTGCTGAAGAATATTCTCAGCTGATGACAGTTAATTTAGACTCCTCATTCCATATGAGTCAACTTGCATACCCTCTTCTCAAAGCATCTGGAAAGGGATGCATTGTGTTCCTTTCATCTGTTGCTGGTGTGACCAGCATGGGTACTGGATCTGTTTATGCAGCAAGCAAAGCTGCAATTAATCAGCTCACAAAAAATCTGGCTTGTGAATGGGCAAAAGACAACATAAGGAGCAACTGTGTTGTACCATGGACCACCAGAACCCCACTTGTCGAACATTTGCTCCAAAACCAAACGTTTGTAAATGATGTCATGTCCCGGACCCCGCTTAAGCGCATTGCAGAAGCCGAAGAAGTGTCATCCTTGGTGGCTTTCCTTTGCTTGCCTGCTGCATCTTACATCACTGGACAAGTTATTTGTGTTGATGGAGGAGTCACTGTCAATGGATTTCAACCCAGCATCAGAATTACCTGA 819 0.475 MAEFESSSKRGGRWCLNGMTALVTGGTRGIGHAIVSDLAAFGATVHTCSRTQTELQKCLEEWRSEGFQVTGSVCDITSPHDREKLLQDVTSTFNGKLNIYVNNVGTNFRKPTIEYSAEEYSQLMTVNLDSSFHMSQLAYPLLKASGKGCIVFLSSVAGVTSMGTGSVYAASKAAINQLTKNLACEWAKDNIRSNCVVPWTTRTPLVEHLLQNQTFVNDVMSRTPLKRIAEAEEVSSLVAFLCLPAASYITGQVICVDGGVTVNGFQPSIRIT 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02196 272 Pfam Enoyl-(Acyl carrier protein) reductase 27 261 - -
Spst1g02196 272 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
Spst1g02196 272 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Spst1g02196 272 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Spst1g02196 272 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Spst1g02196 272 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Spst1g02196 272 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Spst1g02196 272 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 262 IPR036291 -
Spst1g02196 272 FunFam Short-chain dehydrogenase reductase 7 266 - -
Spst1g02196 272 Gene3D - 11 264 - -
Spst1g02196 272 PANTHER TROPINONE REDUCTASE 13 264 IPR045000 GO:0016491
Spst1g02196 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Spst1g02196 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Spst1g02196 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Spst1g02196 272 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02196 Spst-Chr1 30410505 30415276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02196 13 267 Miscellaneous Gene Families AT2G29290 62.646 2.67e-121 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02196 K08081 - gmx:100791265 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02196 1 30410505 30415276 Spst1g02196 1 30410505 30415276 ECH
Spst1g02196 1 30410505 30415276 Spst1g00608 1 7923427 7925169 ECH