Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00608 ATGGATGAAACAAAGTTGAACATGATGAAGGACAATAGGTGGTCACTCCATGGCATGACAGCTCTTGTCACTGGAGCCACCCGAGGCATAGGGCATGCCATTGTTGAAGAATTGGCAGAATTTGGGGCAGCTGTTCATATATGTTCCCGAAACCAAGATGATATTGATAAATGTTTACAAGAGTGGAAAGGCAAGGGACTCACTGTGACAGGTTCAGTATGTGATTTACAATGTTCTGAGCAACGTAAAAGACTCATGGAAATGGTTGGCTCCATCTTTGTCGGAAAGCTTAATATTTTAGTGAACAATGCTGCGACAACTATATCCAAGAAAATAATCGATTACACTGGAGAAGATATATCAACCATAATGGGTACCAATTTTGAGTCCGTTTATCATTTGACTCAACTTGCACACCCACTTCTAAAAGAATCTGGGAATGGGAGCATAGTGTTTATTTCCTCCATTGCAAGTTTAAAAGCTATTCCTGTTTTATCTGTTTATGCAGCCTCTAAAGGAGCAATGAATCAATTCACCAAAAGCTTAGCAATGGAATGGGCAAAGGATAATATTCGTGCAAATGCTGTAGCACCTGGACCTGTTATGACTAAACTTTTAGAGTCTATCATGAACTCTTCGGGAGGGGATGAGTCAGTGGATGGTGTTGTGTCTCAAACATTTGTTGGTCGCATGGGAGATCCTAAAGAGATATCAGCCTTAGTTGCTTTTCTTTGTCTTCCGGCTGCATCATACATCACTGGACAGGTTATATGTGCAGACGGCGGTTTCTCAGCGTAG 798 0.4148 MDETKLNMMKDNRWSLHGMTALVTGATRGIGHAIVEELAEFGAAVHICSRNQDDIDKCLQEWKGKGLTVTGSVCDLQCSEQRKRLMEMVGSIFVGKLNILVNNAATTISKKIIDYTGEDISTIMGTNFESVYHLTQLAHPLLKESGNGSIVFISSIASLKAIPVLSVYAASKGAMNQFTKSLAMEWAKDNIRANAVAPGPVMTKLLESIMNSSGGDESVDGVVSQTFVGRMGDPKEISALVAFLCLPAASYITGQVICADGGFSA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00608 265 PANTHER TROPINONE REDUCTASE 12 264 IPR045000 GO:0016491
Spst1g00608 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Spst1g00608 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Spst1g00608 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Spst1g00608 265 Gene3D - 2 265 - -
Spst1g00608 265 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Spst1g00608 265 Pfam Enoyl-(Acyl carrier protein) reductase 25 264 - -
Spst1g00608 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 264 IPR036291 -
Spst1g00608 265 FunFam Short-chain dehydrogenase reductase 8 265 - -
Spst1g00608 265 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Spst1g00608 265 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Spst1g00608 265 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Spst1g00608 265 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Spst1g00608 265 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Spst1g00608 265 PRINTS Glucose/ribitol dehydrogenase family signature 227 247 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00608 Spst-Chr1 7923427 7925169 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00608 7 264 Miscellaneous Gene Families AT2G29150 56.371 2.56e-99 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00608 K08081 - gmx:100786456 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00608 1 7923427 7925169 Spst1g00608 1 7923427 7925169 ECH
Spst1g02196 1 30410505 30415276 Spst1g00608 1 7923427 7925169 ECH