Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01960 ATGTGCTGTGCCGCTGGACATTACTGTCCTAAGAAGAACGGTGATGCTTGTAGCCTGGAGTCAAGTCAAGTATGGGGCATGTCAAGAGTACGTGGCTTGGATGTAAAAACGTTAATATTTCTTTTTGGTGTTGTGCCAATGTGCACATTTGGAATATACTTGCATGGACAGAAAATCTCCTACTTCCTGAGGCCGCTATGGGAAAAACCACCCAAGCCTTTCAATGTGATTCCTCATTACTATAACGAGAATGTGTCAATGGAGAATCTCTGCAGACTTCATGGCTGGGGAGTCCGTGAGTTCCCAAGGCGTGTGTATGATGCTGTGTTGTTCAGTAACGAATTGGAAATACTAAACTTGCGGTGGAGAGAATTGTATCCTTACATAACACAGTTTGTTCTCCTTGAGTCAAATTCCACGTTCACTGGTAGGCCTAAACCTCTGGTTTTCAAAAGCAATCGGGAGCAGTTCAGATTTGTGGATTCCCGGTTAACATATGGAACCATTGGTGGGAGATTCATCAAAGGAGAAAACCCGTTTATCGAGGAGGCGTATCAGCGTGTAGCATTGGACCATCTCCTTAAGATTGCTGGTATCACAGATGATGACTTGCTCATTATGTCTGATGTTGATGAGATTCCAAGTGCTCACACAATTAACCTCTTGAGGTGGTGTGATGATGTGCCTTCAATCCTTCATCTTCAGCTGAAGAACTATCTGTATTCATTTGAGTTTATTGTGGATGATAACAGCTGGAGAGCCTCTGTTCACAGGTATCGGAGTGGTAAGACAAGGTATGCACATTACCGCCAATCTGATGACTTACTGGCAGATGCTGGTTGGCATTGCAGCTTTTGCTTCCGCCATATCAGCGATTTCATCTTTAAGATGAAAGCTTATAGTCATAATGACAGAGTCAGATTCTCTCATTATTTAGATCCCAAGAGAATTCAAGATGTAATATGCAAAGGGGCTGATTTGTTTGACATGCTACCAGAGGAGTACACCTTCAAGGAAATCATTGGTAAAATGGGACCAATACCTCACTCCTATTCTGCAGTTCATCTTCCTGCTTATCTACTACAGAATGCAGACAAGTATAAATTTCTCTTGCCAGGAAATTGCTTGAGAGAGAATATATAA 1143 0.4234 MCCAAGHYCPKKNGDACSLESSQVWGMSRVRGLDVKTLIFLFGVVPMCTFGIYLHGQKISYFLRPLWEKPPKPFNVIPHYYNENVSMENLCRLHGWGVREFPRRVYDAVLFSNELEILNLRWRELYPYITQFVLLESNSTFTGRPKPLVFKSNREQFRFVDSRLTYGTIGGRFIKGENPFIEEAYQRVALDHLLKIAGITDDDLLIMSDVDEIPSAHTINLLRWCDDVPSILHLQLKNYLYSFEFIVDDNSWRASVHRYRSGKTRYAHYRQSDDLLADAGWHCSFCFRHISDFIFKMKAYSHNDRVRFSHYLDPKRIQDVICKGADLFDMLPEEYTFKEIIGKMGPIPHSYSAVHLPAYLLQNADKYKFLLPGNCLRENI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01960 380 PANTHER BETA-1,4-MANNOSYL-GLYCOPROTEIN BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE 30 378 IPR006813 GO:0003830|GO:0006487|GO:0016020
Spst1g01960 380 Pfam Glycosyltransferase family 17 33 378 IPR006813 GO:0003830|GO:0006487|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01960 Spst-Chr1 27763098 27764862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01960 4 379 Glycosyltransferase AT1G12990 76.562 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01960 K00737 - gmx:100816069 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01494 3 18399262 18401213 Spst1g01960 1 27763098 27764862 PCT