Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01946 ATGTTCCTTTTTCCTTTCTCAATTTCAAACATGCAACGTGATAATCTTATAAAGAAGCTCCTCCTTACACACGATCCAGATGGTCGTAGGTTGGATTCTGAGTCAATGCTTCTTGCTGTGGGCAACATTATGTTTCATGCTTCCACAATAATAGTGACTTCTAATTTATATTCTGCTTCCTTTCAGAAGAATGATATAACTGAAATTGAAACGGTTGGTTGTAGTGAATCGGTAGGATTCATCCTCACAAAAATATGCAAGATACTCTGCAAATGCTCTGGTGAAGATGATGTTAACTCAAGGGTCATAAATTTGTTTGATTTGATAGGGAAGTATAGCTGGGATGCAAAAGTAGTTATAGTGCTTGCTGCATTTGCTGTAAGATATGGTGAATTTTGGCAACTTATGCAGCTACATCGTGGTAACAATTTGGCAGCTTTAATTTCAAGTATCAAGCAGCTTCCCTGCAACTTAAAGCCACTGAAGTTACAAATCAAGGCATTGAGCTTTTTGGTTAAGACCATGATGGATGTGGCTATGTGTATAATTAAGTTTGAATACTTGCCCCTTCAACACGTAGAGCATGGAAATGAGATATTCATAGTCACAAAGTCTCAAATATACGAAGCTGCATACTGGATCGCCAGAAGCTGTTTAACATGCTTTTCTCAAGTCCAGGATTTCACAACCAAGCAACATGAGCAAGTGTACTCAGATTCAACAATAATTGCTGCATGGGAGCTTTCAAGTTTGGCGTATAGATTAAGTGGCATATGCTGCAGTCTCAGAAGACAGGTTGATATGTGTCACGAAGAAATAGAGAGAAACTTGTATCACAGGCTGTTGGATCTTGCTCGTGAGGAGCACATTGATAATCAGAACATCCTTACTTTATTTTTTCCTTCCAAGAATTACGTGCCATTGAAGGATTGCTCAACAGAAGTAAAGTTAGGTGTGTCTGAGATGAAAAATAAGATAGTTCTGTTGTTGATCACAAAACCACAGATACTCAGTCCAGTGGATATATTCTTACTAGTCCAGCAAACATGTGATCATCCTCTGAATGAGAGGCTGGGGAAGAGTTACATGATTGTGTGGATTCCCCTTCCATCTTCTGATTCATGGACTGAAGCTGAAGAAAGTAGTTTTAATTTTCTGTCAGATTCCTTGCCTTGGCATGCTGTTCGGAAACCGAGGTTACTTAACTCAGCAGTGGTCAAGTACATAAGGGAACGATGGAACTACAAGGATGAGCCCATCATGGTGGCTCTAGATTCAAAAGGGAAGGTCACCAATTACAATGCTCTTGATATGATCAACATTTGGGGAGCCAAAGCTTATCCTTTTTCAGCTTCGAAAGAGGAAGAACTGTGGCAAGACCAGAATTTGACAATGCAACTTTTGCTGGATGGCATCAATCCTCTCCTTGCTTATTGGGTTGAGCAAGGCAAAAGTATTTGCCTTTATGGGAGTGAAAACTTGGCTTGGATCCAACAATTCAATTATAAGATAACTGAGCTCAAACGAGCAGGTCTGGAGCTGGAAACAATATATGTTGGTAATAATCAATTAGGTGAACATGTTAAGCAAATAATGGCAAGAAGTGGTGAAACAAGTCTCAGTGATCCACTTTCCTTCACAAACGTCCAATTCTTTTGGCTTCGGTTGGAGAGTATGAGAAAGTCTAAACTCAGACTAGGGAAGACAACAAGTTGTGATCATGTACTAGCAGAGTTGTCAGCTTTGCTTGAAATGGATGACAGAGAGGAAGGTTGGGCAGTGATTGGAAGTGGGGGTTCAACTGATATTATTAGACTTCAAGGGATGCAAGTGACGGAATTCTTAAGGAACAATTCTGAGTGGAAAGAAAATATAACCAAGTTTGGATTGTCAGGTGCTCCAAGAAACTTCCTAGAAACTGATGTTGTTGCAGGGAGTTGCACTCACTCTTACTTTGTTCCCTCAAGAGAAAATGCAAGACTGAATCAAGAAACTGTAATTTGTCAATCGTGCAAGCGTCCCATGAAGAAGTTTGTGGTGTACCAGCCATGA 2052 0.4001 MFLFPFSISNMQRDNLIKKLLLTHDPDGRRLDSESMLLAVGNIMFHASTIIVTSNLYSASFQKNDITEIETVGCSESVGFILTKICKILCKCSGEDDVNSRVINLFDLIGKYSWDAKVVIVLAAFAVRYGEFWQLMQLHRGNNLAALISSIKQLPCNLKPLKLQIKALSFLVKTMMDVAMCIIKFEYLPLQHVEHGNEIFIVTKSQIYEAAYWIARSCLTCFSQVQDFTTKQHEQVYSDSTIIAAWELSSLAYRLSGICCSLRRQVDMCHEEIERNLYHRLLDLAREEHIDNQNILTLFFPSKNYVPLKDCSTEVKLGVSEMKNKIVLLLITKPQILSPVDIFLLVQQTCDHPLNERLGKSYMIVWIPLPSSDSWTEAEESSFNFLSDSLPWHAVRKPRLLNSAVVKYIRERWNYKDEPIMVALDSKGKVTNYNALDMINIWGAKAYPFSASKEEELWQDQNLTMQLLLDGINPLLAYWVEQGKSICLYGSENLAWIQQFNYKITELKRAGLELETIYVGNNQLGEHVKQIMARSGETSLSDPLSFTNVQFFWLRLESMRKSKLRLGKTTSCDHVLAELSALLEMDDREEGWAVIGSGGSTDIIRLQGMQVTEFLRNNSEWKENITKFGLSGAPRNFLETDVVAGSCTHSYFVPSRENARLNQETVICQSCKRPMKKFVVYQP 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01946 683 Pfam Sieve element occlusion N-terminus 14 289 IPR027942 -
Spst1g01946 683 Pfam Sieve element occlusion C-terminus 452 682 IPR027944 -
Spst1g01946 683 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 9 682 IPR039299 GO:0010088
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01946 Spst-Chr1 27652351 27655526 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01946 - - pvu:PHAVU_001G256100g 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01514 3 18569762 18573286 Spst1g01946 1 27652351 27655526 PCT