Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01577 ATGGATTGTTGGTCCTCTCCTCTCCCTCTCCATGATGAATTCGAGAAGCTTGTCATTCGAATGAACCCTCCCAGAGTTGCTGTGGATAACATTTCAAGCAGGACGGATACTGTGATAAAGGTTGATAGTGCAAACAGGCGGGGGAGCTTGCTGGAAGTGGTTCAGGTTCTCACTGACATGAATCTCAGTGTTAGAAGAGCTTACATTTCCTCTGATGGAGAATGGTTCATGGATGTTTTTCATGTCACGGATCAAAATGGGAAAAAGTTTGTGCAAGATGATGTAGCTGACCGTATTCAACAGTCACTGGGTCCAAGAGCCTCTAGTTTCCGATCCTTGAGAAGATCTGTTGGGGTTCAAGCTGAAGCAGAACATACAACCATTGAATTAACCGGAAGAGACAGGCCAGGGCTGCTTTCAGAAGTTTTTGCTGTTCTTACAGACCTCAAATGTAATGTGGTAGCAGCAGAAGTCTGGACACACAATTCAAGAATGGCATCTGTTGTTTACATCACAGATGAGGCGACAGGATTACCCATCGACAATCCGGATCGCCTTGTTAAGATTAAACAGCTTCTACTGTATGTGCTGAAAGGAGACATAGATAAGAAGAGTGCCAACACTGCTGTTTCTGTTGGCTCTACTCACAAGGATAGGAGGCTGCATCAGTTGATGTATGCCGATCGTGATTATGACATAGATGATGGGGATTCTGGTTCAACAAGTGACAGGAACAAGGCCCTCGTAACTGTTGATGATTGCATAGATAAGGGATATACTGTTGTGAACTTGAGGTGTCCAGATAGACCAAAGTTACTGTTTGATACCGTTTGCACACTCACAGACATGCAGTATGTTGTGTTCCATGGAACTGTCATTGCTGAAGGACCAGAGGCATATCAGGAATATTATATAAGGCATGTGGATGGATGTCCTATCAGTTCTGAAGCAGAAAGGCAAAGAGTGATTCATTGTTTGGAGGCTGCTATTAGGAGACGAACATCTGAGGGCATAAAGCTAGAACTATGTGGGGAGGACAGGGTTGGTCTTCTCTCTGATGTAACTCGCATCTTTAGAGAAAATGGTCTTTCAGTCAACCGTGCTGAAGTTACAACCAGGGGCACTCAAGCCATGAATGTTTTCTATGTGACTGATGTGACTGGAAATCCAGTTAAGAGTGACACAATTGAAGCAGTTCGGAAAGAGATTGGCTTGGCCATACTGCATGTCAAAGATGATGTCTGCTTAAAACCTCCACCTCAAGAGAGTGGAAAATTCTCTTTGTCTGGTCTCTTTCGGTCAAGCTCTGAGAAGTTTCTTTACAACTTAGGTCTAATGAAGTCTTATAGTTGA 1353 0.4375 MDCWSSPLPLHDEFEKLVIRMNPPRVAVDNISSRTDTVIKVDSANRRGSLLEVVQVLTDMNLSVRRAYISSDGEWFMDVFHVTDQNGKKFVQDDVADRIQQSLGPRASSFRSLRRSVGVQAEAEHTTIELTGRDRPGLLSEVFAVLTDLKCNVVAAEVWTHNSRMASVVYITDEATGLPIDNPDRLVKIKQLLLYVLKGDIDKKSANTAVSVGSTHKDRRLHQLMYADRDYDIDDGDSGSTSDRNKALVTVDDCIDKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVFHGTVIAEGPEAYQEYYIRHVDGCPISSEAERQRVIHCLEAAIRRRTSEGIKLELCGEDRVGLLSDVTRIFRENGLSVNRAEVTTRGTQAMNVFYVTDVTGNPVKSDTIEAVRKEIGLAILHVKDDVCLKPPPQESGKFSLSGLFRSSSEKFLYNLGLMKSYS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01577 450 CDD ACT_ACR_4 337 408 - -
Spst1g01577 450 ProSiteProfiles ACT domain profile. 127 204 IPR002912 -
Spst1g01577 450 ProSiteProfiles ACT domain profile. 38 118 IPR002912 -
Spst1g01577 450 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 11 411 IPR040217 -
Spst1g01577 450 Pfam ACT domain 37 86 IPR002912 -
Spst1g01577 450 Pfam ACT domain 126 174 IPR002912 -
Spst1g01577 450 Pfam ACT domain 341 401 IPR002912 -
Spst1g01577 450 Gene3D - 337 411 - -
Spst1g01577 450 SUPERFAMILY ACT-like 124 179 IPR045865 -
Spst1g01577 450 CDD ACT_ACR_2 126 199 - -
Spst1g01577 450 Gene3D - 125 195 - -
Spst1g01577 450 CDD ACT_ACR_3 259 333 - -
Spst1g01577 450 ProSiteProfiles ACT domain profile. 339 414 IPR002912 -
Spst1g01577 450 SUPERFAMILY ACT-like 335 404 IPR045865 -
Spst1g01577 450 SUPERFAMILY ACT-like 35 104 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01577 Spst-Chr1 19642001 19644533 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01577 - - gmx:100798999 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01577 1 19642001 19644533 Spst1g01577 1 19642001 19644533 ECH
Spst1g01577 1 19642001 19644533 Spst3g04358 3 95211434 95213963 ECH