Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01246 ATGGCAACCATGAATCCCTTTGATTTGTTGGGTGACGACGCTGAGGACCCTTCTCAGCTCATCGCCGCTGAGCAACTCAAGGCAGCGGCGGCGGCCACGGCGGCTCCCAAGAAGGCGGCGGCTCAGCAGAACAAACCGGCTCAGCTGCCCACCAAGCCTCCTCCTCCTGCTCAAGCCGTGAGAGAGTCCAGAAATGAGACTATTCGTGGAGGCCGTGGTGGCGGAAGAGGTGGTGGACGTGGATTTGGACGTGGTCGTGGGTTCAGTAGGGACTCTCCCAATGATGAGAATTCATTTCCTACCTCTGTAGCTCCTTACAATCAGGCTTCTTTTGAAGAAGGAGATGCTGGGAAGTCTTCTGAAAGGCGTGTCTATGGTGGACCGAGACCTCCTTACCGTGGAGGAGGTCGTCGCGGAGGTTTCAGCAATGGTGAAACTGGTGAAGGCGAAGAAGGACGCCCTCGGAGAGCATTTGATCGTCGCAGTGGGACTGGACGAGGAAATGAATTTAAACGTGAAGGTGCTGGACGTGGTAACTGGGGAACACAAACTGATGAAATTGATCAGGCAACTGATGAAGTCGCAAATGAAACTGAAAAGAATTTGGGAGATGAGAAGCATGCTCTTGAAGAAGTAGCTGATGGAAACAAGGACAGTCCTGTTAATGAAACTGAAGAGAAAGAACCTGAAGATAAGGAGATGACTCTAGAGGAATATGAGAAAGTCCTGGAAGAGAAAAGGAAGACCTTTCAAGCACCCAAGACTGAAGAGAGAAAGGTAGACACGAAAGTGTTTGAATCCATGCAACCCTTATCAAGCAAGAAAGACAAACACGACATATTCATTAAACTGGGATCTGATAAAGATAAGCGAAAAGAGGCTTTGGAGAAGGAAGAAAAATCGAAGAAGTCCGTTAGCATCACCGAATTCCTGAAGCCTGCTGAAGGAGAAACATACTATCCAGGCGGGCATGGCAGGGGCCGTGGCCGTGGCTCCCGTGGTGGTTACCGCGGAAGTACCACCAACAATGCACCTGCTCCATCCATCGAAGATCCTGGGCATTTCCCAACCTTGAGTGGCAAGTGA 1086 0.5055 MATMNPFDLLGDDAEDPSQLIAAEQLKAAAAATAAPKKAAAQQNKPAQLPTKPPPPAQAVRESRNETIRGGRGGGRGGGRGFGRGRGFSRDSPNDENSFPTSVAPYNQASFEEGDAGKSSERRVYGGPRPPYRGGGRRGGFSNGETGEGEEGRPRRAFDRRSGTGRGNEFKREGAGRGNWGTQTDEIDQATDEVANETEKNLGDEKHALEEVADGNKDSPVNETEEKEPEDKEMTLEEYEKVLEEKRKTFQAPKTEERKVDTKVFESMQPLSSKKDKHDIFIKLGSDKDKRKEALEKEEKSKKSVSITEFLKPAEGETYYPGGHGRGRGRGSRGGYRGSTTNNAPAPSIEDPGHFPTLSGK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01246 361 SMART HABP4_PAI_RBP1_2 154 261 IPR006861 -
Spst1g01246 361 MobiDBLite consensus disorder prediction 148 173 - -
Spst1g01246 361 MobiDBLite consensus disorder prediction 193 236 - -
Spst1g01246 361 MobiDBLite consensus disorder prediction 244 263 - -
Spst1g01246 361 MobiDBLite consensus disorder prediction 92 108 - -
Spst1g01246 361 MobiDBLite consensus disorder prediction 284 361 - -
Spst1g01246 361 Pfam Stm1 1 74 IPR019084 -
Spst1g01246 361 Pfam Hyaluronan / mRNA binding family 154 260 IPR006861 -
Spst1g01246 361 Gene3D - 152 264 - -
Spst1g01246 361 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 359 IPR039764 GO:0003723
Spst1g01246 361 MobiDBLite consensus disorder prediction 27 236 - -
Spst1g01246 361 MobiDBLite consensus disorder prediction 284 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01246 Spst-Chr1 14746353 14749326 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01246 K13199 - gmx:100814825 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01246 1 14746353 14749326 Spst1g01246 1 14746353 14749326 ECH
Spst4g00754 4 34108691 34112252 Spst1g01246 1 14746353 14749326 PCT