Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01101 ATGGTGGAATGGAAAAGAACAGGGATATCATATGTAGGTGGAGAGGTAGCTTTGGCTTGTGGTTTGTTGATGTGGATTGGAAGCATCAATGGAATTAGGCGTAAAGTGTTTGAGGTGTTCTTCTACAGTCACTACCTCTACATTCTCTTCATCGTCTTCTACATCTTTCACGTTGGTTTCTTGTATGCATGCACAATGCTCCCTGCTTTCTACCTCTTCTTAGTTGATCGGTATCTGAGGTTTTTGCAATCAAGATACCAAGTTCGTTTGCTTTCTGCTTGTGTTTTGCCATGTCAAACTGTACAACTCAACTTCTCCAAGAGCCACGGTTTGACTTATAGTCCCACAAGTATTCTGTTCATAAATGTTCCAAGTATCTCCAAGCTACAGTGGCATCCATTTACCATTACTTCTCATAGTAATTTGGAGCCAGAAGTGCTGAGTGTAGTAATTAAAGGTGAAGGAACGTGGTCCAGGAAGCTCTACCAGATGATTTCAATCCCTTCCGCAATTGATCATCTCAGTGTCTCTGTTGAAGGTCCATATGGTCCTGCATCCACCAATTATCTAAGGTCTGCATCTAATGATCAAAAAACAAATTTTACATGCAATTTAGACCCCTCAGTGGTAGCTTCGTAG 639 0.4131 MVEWKRTGISYVGGEVALACGLLMWIGSINGIRRKVFEVFFYSHYLYILFIVFYIFHVGFLYACTMLPAFYLFLVDRYLRFLQSRYQVRLLSACVLPCQTVQLNFSKSHGLTYSPTSILFINVPSISKLQWHPFTITSHSNLEPEVLSVVIKGEGTWSRKLYQMISIPSAIDHLSVSVEGPYGPASTNYLRSASNDQKTNFTCNLDPSVVAS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01101 212 PRINTS Cytochrome B-245 heavy chain signature 12 35 IPR000778 GO:0016020|GO:0016491
Spst1g01101 212 PRINTS Cytochrome B-245 heavy chain signature 37 57 IPR000778 GO:0016020|GO:0016491
Spst1g01101 212 PANTHER NADPH OXIDASE 1 189 - -
Spst1g01101 212 SUPERFAMILY Riboflavin synthase domain-like 86 184 IPR017938 -
Spst1g01101 212 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 83 188 IPR017927 GO:0016491
Spst1g01101 212 CDD NOX_Duox_like_FAD_NADP 87 191 - -
Spst1g01101 212 Pfam FAD-binding domain 87 186 IPR013112 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01101 Spst-Chr1 13451597 13452792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01101 1 194 Miscellaneous Gene Families AT1G23020 65.464 2.58e-90 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01101 K00521 - gmx:100814642 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01101 1 13451597 13452792 Spst1g01101 1 13451597 13452792 ECH
Spst1g01101 1 13451597 13452792 Spst4g01852 4 58854469 58858280 PCT