Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01096 ATGGATGGTGCTGAACTGATGAATGTATATCTCCAGGTGTTTGGTTCATTGGTCTTTTCAATGGCATTGGACCCACAAGGACACAATCAAAGATGTGTGGAAGCATGCACAAATTCAATGATGAGGGGGGATTTGTGTAACAGTTCAGTTTATCCACTTTCATGCATAGCATCTGATGTATCTAATGCTTTGGAAGCTAAAGTGAACAAGTCAATGTTAGAAAATTTGGTGACCTGCAAAAGTAATTCTGAAGCTTTTTGTGTTCCTGAAGGTGTGCCAACCTTCTTCTCCATGGATATAATGAATGTGGCAGAAGAAATTATCATTACTGCAACAAATATCAGATTCAATGTTACTCCATCAAATGATATTAGTTTAATGTGTTTTGTCCGCCACGGTGCAATGCCTTCTGTGACTTCTAATGATTATTCCATTGATATAGCGAAACGCCGATTGGTTATTCATTCACCATTAATTGGTCGTTGGTATATTAGTATAGTACCAGTCAATCTTACAAACACTCAGGTTAACAATGTAAGAGTTTGCTATTCAGTGGAATCTCAAGTGCTTCAATGTCCACTTGGGAAAGCTGGACCGAATTGTACAATGGATAGCTACTTTCTTCAGACTTTTGTAAGGAGAGGTTCAACCCCTTTTGAGTCGTATTATTTACCAGTTGGTGGAGCATCCTATGATTCTGCCAATTTCCCAATTGAACCACTTCTGAAAAACTCATCATACATTGGAGAACCTGATAACATTTGGACTTACTTTCTTTTGGACATTCCTCGTGGTGCAGCTGGAGGAAATATTCACATACAATTATCCTCAGATACGAAGATTGGTTATGAAGTGTATGCTAGATTTGGTGGATTACCATCTCTAGATAGCTGGGACTATTATTATGCTAACAACACAAGGAGAAGCGATCCATCTATGTTTTTCACGCTATATGACTCGACTGATGTCAAAGTGAATTTTTATATTATGTATGCTAGAGAAGGAACTTGGGGTTTTGGTCTAAGACATCTTAATACCAGCAATGATTCCTTGAAAGGGCTAAATATCATGTCTATTTCACTTGAGCGATGCCCAAAACGATGTTCCTCTCATGGAGACTGTAAATTTTCATTTGATGCTAGTGGATTGACATCTTACAGCTTCTGCTCTTGTGATCGAAACCATGGTGGCTTTGACTGTAGCATTGAGATTGTAACTCATCAAGGGCATGTACGACAATCGATTTTTCTCATTGCATCAAATGCTGCAGCCATACTTCCTGCCTATTGGGCCCTTCGGAAGAAGGCATTAGCAGAATGGGTTCTATACACATCCAGTGGGATTTCAAGCGGACTATACCATGCGTGTGATGTAGGAACCTGGTGTGCATTGAACTATAACGTCTTACAGTTCATGGACTTCTGGCTATCGTTCATGGCTGTGATTAGCACTTTTCTTTATCTGACTACCATTGATGAAGTATTTAAGAGGGCAATCCATACAGCTGTTGCTATCCTTACTGCCCTGATGGCTGCAACAAAAGCAACCAGGTAG 1554 0.397 MDGAELMNVYLQVFGSLVFSMALDPQGHNQRCVEACTNSMMRGDLCNSSVYPLSCIASDVSNALEAKVNKSMLENLVTCKSNSEAFCVPEGVPTFFSMDIMNVAEEIIITATNIRFNVTPSNDISLMCFVRHGAMPSVTSNDYSIDIAKRRLVIHSPLIGRWYISIVPVNLTNTQVNNVRVCYSVESQVLQCPLGKAGPNCTMDSYFLQTFVRRGSTPFESYYLPVGGASYDSANFPIEPLLKNSSYIGEPDNIWTYFLLDIPRGAAGGNIHIQLSSDTKIGYEVYARFGGLPSLDSWDYYYANNTRRSDPSMFFTLYDSTDVKVNFYIMYAREGTWGFGLRHLNTSNDSLKGLNIMSISLERCPKRCSSHGDCKFSFDASGLTSYSFCSCDRNHGGFDCSIEIVTHQGHVRQSIFLIASNAAAILPAYWALRKKALAEWVLYTSSGISSGLYHACDVGTWCALNYNVLQFMDFWLSFMAVISTFLYLTTIDEVFKRAIHTAVAILTALMAATKATR 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01096 517 PANTHER FIVE-SPAN TRANSMEMBRANE PROTEIN M83 32 517 IPR021910 GO:0016020
Spst1g01096 517 ProSitePatterns EGF-like domain signature 1. 389 400 IPR000742 -
Spst1g01096 517 Gene3D - 230 404 - -
Spst1g01096 517 Pfam Protein of unknown function (DUF3522) 410 516 IPR021910 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01096 Spst-Chr1 13398117 13402756 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01096 - - vum:124838785 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01096 1 13398117 13402756 Spst1g01096 1 13398117 13402756 ECH
Spst1g01096 1 13398117 13402756 Spst4g01844 4 58774028 58793559 PCT