Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01080 ATGGCTCTGGGTGGTTTGGTTTCCAACAGAAACTTCACTTCTTTCATAGGACCAGGAAATGTATATCAATTGGGAAAGGATCTATCACCTCAAAGAGGGGGCATTTCTTGTGTTTGTGTTGCACGTTATGGTGGCCAGGTTGCAAAGGATCCTTTCTCAAGATGGTGGCATGGATTGCGTTTTCATGCTAGAGAACCTTTGAATGAGAAAGTTTCAAAACCAATACCAACATTTCATGATGAAGTGCAACATTGTTCTCCAATGTCCCAGAAATCCATTCACTGCATGAACATGAAACTTAAGGCCACCAGAAGATGTCAATGCTACCTCGCTTCAGATCCCTATAGCAGGAGCCTTGTTCAACAAAGAGCAGTATATGGACTAGGTTTAAACAAGGTGAATCCAGCTCGTGTTCACTACAAGTCTGAGGAGTATGATATTACAGAATCGGAGGTGAATCCTCTTGCATCAACTGAAGGGACAGGTGAAGCCATTCTCGTGGAAGGGAATGTTCCGCAAGTATCTTCTTGGTGGCAACAGTTTCCTAAGCGCTGGGTTATTGTATTGCTATGTTTTGCAGCATTTCTGCTGTGCAACATGGACCGTGTAAATATGAGCATAGCAATACTTCCAATGTCACAAGAATTTAACTGGAACAGTGCAACAGTTGGCCTAATTCAGTCATCTTTTTTCTGGGGCTACCTTCTTACTCAGATCCTTGGTGGCATATGGGCAGACAAACTTGGTGGGAAGCTAGTGCTAGGTTTTGGAGTTGTCTGGTGGTCAATGGCAACAATTTTAACACCTATTGCTGCAAGAATTGGGCTGCCATGTTTGCTTATTATGCGTGCATTTATGGGGATTGGTGAGGGTGTTGCCATGCCTGCTATGAATAATATGCTTTCCAAGTGGATTCCAGTTTCAGAGAGAAGTAGATCACTTGCCCTAGTATATAGTGGCATGTACCTTGGTTCTGTGGTTGGCTTGGCATTCTCACCGTTGCTAATCCAAAAATTTGGGTGGCCATCAGTTTTTTACTCTTTCGGATCCCTTGGAAGTATCTGGTTTGCCTTGTGGTTAAGAAAGGCATATAGCTCCCCAAAAGATGACCCTGATCTTGGGGTAGAGGAGAAAAGGTTCATACTAGAAGGCAATGTATCAAATGCACCTGTTTCTTCTATTCCTTGGAAATTAATTTTATCAAAAGCACCTGTTTGGGCTCTTATAATCTCTCATTTCTGTCACAATTGGGGGACTTTTATTCTTTTAACCTGGATGCCTACTTATTATAATCAGGTTCTGAAGTTCAATCTCACCGAATCAGGGCTCTTATGTGTTCTTCCATGGTTAACCATGGCTGCTTTTGCAAATATTGGTGGGTGGATTGCTGATACACTTGTGAGAAAAGGCCTCTCCATAACAAATGTTCGAAAGATCATGCAAACAATAGGGTTTCTGGGTCCTGCCTTTTTTCTTTCACAGCTGAGCCACGTCAGAACACCTGCTATGGCTGTATTGTGCATGGCGTGTAGTCAGGGATCTGATGCATTCTCACAATCTGGTCTCTATTCCAATCACCAAGACATTGGACCCCGCTATGCAGGTGTATTGCTTGGACTATCGAATACGGCAGGAGTGCTTGCTGGTGTCTTTGGTACAGCTGCAACTGGTTTAATACTCCAGCGAGGTTCTTGGAATGATGTTTTTAAGGTTGCTGTTGCATTGTACATAATAGGCACATTGGTGTGGAATATCTTTTCAACCGGGGAGAAAGTTCTTGATTGA 1785 0.4303 MALGGLVSNRNFTSFIGPGNVYQLGKDLSPQRGGISCVCVARYGGQVAKDPFSRWWHGLRFHAREPLNEKVSKPIPTFHDEVQHCSPMSQKSIHCMNMKLKATRRCQCYLASDPYSRSLVQQRAVYGLGLNKVNPARVHYKSEEYDITESEVNPLASTEGTGEAILVEGNVPQVSSWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFNWNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKLVLGFGVVWWSMATILTPIAARIGLPCLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVVGLAFSPLLIQKFGWPSVFYSFGSLGSIWFALWLRKAYSSPKDDPDLGVEEKRFILEGNVSNAPVSSIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAAFANIGGWIADTLVRKGLSITNVRKIMQTIGFLGPAFFLSQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGLILQRGSWNDVFKVAVALYIIGTLVWNIFSTGEKVLD 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01080 594 PANTHER SOLUTE CARRIER FAMILY 17 176 591 - -
Spst1g01080 594 Pfam Major Facilitator Superfamily 191 552 IPR011701 GO:0022857|GO:0055085
Spst1g01080 594 SUPERFAMILY MFS general substrate transporter 174 586 IPR036259 -
Spst1g01080 594 FunFam ascorbate transporter, chloroplastic isoform X1 392 592 - -
Spst1g01080 594 Gene3D MFS general substrate transporter like domains 399 591 IPR036259 -
Spst1g01080 594 CDD MFS_SLC17A9_like 188 587 IPR044777 -
Spst1g01080 594 ProSiteProfiles Major facilitator superfamily (MFS) profile. 187 591 IPR020846 GO:0022857
Spst1g01080 594 FunFam ascorbate transporter, chloroplastic isoform X2 182 371 - -
Spst1g01080 594 Gene3D MFS general substrate transporter like domains 182 371 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01080 Spst-Chr1 13243185 13248647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01080 1 594 Organic Solute Cotransporters AT4G00370 72.727 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01080 K08193 - gmx:100784401 1148.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01080 1 13243185 13248647 Spst1g01080 1 13243185 13248647 ECH
Spst1g01080 1 13243185 13248647 Spst4g01836 4 58699524 58705053 PCT