Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00963 ATGGCCACACTCAAGACCCTTTGCTTCAGAGCAACCACCTTCCCCGTCTGCCCCTCCAATGTCACCAATAATAAAAACACCAGGAGCTCATCCTGGAAGCCTCCACGAGCAGCTGTGCAACCCAGTTTGCACCTCCCAATGCGCAGTTTTGAGTTGAAAAATAGGACTTCCGCAGAGGACATAAAGTGTCTGAGGTTGATAACTGCCATCAAAACTCCATACCTACCTGATGGTCGATTTGATCTGGAAGCATATGATGATTTGGTGAATATGCAGATTGGACAAGGGGTCGAAGGTGTTATTGTTGGTGGGACAACTGGTGAAGGGCAATTAATGAGCTGGGAGGAGCACATAATGCTCATTGCACATACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACCGAGCAGGGTTTTGCTGTTGGAATGCATGCTGCCCTTCACATAAACCCTTACTATGGCAAAACCTCCTTGGATGGCATGGTTGCTCACTTTCAAAGTGTGCTTTCAATGGGACCCACAATAATCTATAATGTGCCTTCACGAACTGGTCAAGACATTCCTCCACATGTAATTCAAACCTTAGCTGAAAGTGCTAACTTGGCTGGTGTCAAGGAGTGTGTGGGAAATGATCGGATCAAGCTGTATACAGACAATGAAATTGTTGTGTGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGTTATGGAGCTACTGGAGTGATATCTGTTGCAAGCAACCTGATTCCTGGTTTAATGCGGGAACTCATGTTTGGTGGTGTAAATCCTACACTAAATTCTAAGCTATTACCTTTGATTGACTGGCTTTTCCACATGCCAAACCCCATTGGTTTGAACACTGCTCTTGCTCAGCTTGGGGTTGTCAGGCCCGTTTTTAGGCTACCATTTGTACCTCTTCCTGTGGAGAAAAGGATAGAATTCGCCCATATAGTGAAGGTAATTGGTCGAGAGCATTTTGTTGGAAATAAAGATGTTGAGGTTCTTGATGACGAAGACTTTTTCTTGGTCAGTCGTTATTAA 1092 0.4469 MATLKTLCFRATTFPVCPSNVTNNKNTRSSSWKPPRAAVQPSLHLPMRSFELKNRTSAEDIKCLRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQTLAESANLAGVKECVGNDRIKLYTDNEIVVWSGNDDQCHDARWGYGATGVISVASNLIPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVEKRIEFAHIVKVIGREHFVGNKDVEVLDDEDFFLVSRY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00963 363 ProSitePatterns Dihydrodipicolinate synthase signature 2. 192 222 IPR020625 GO:0016829
Spst1g00963 363 ProSitePatterns Dihydrodipicolinate synthase signature 1. 99 116 IPR020624 GO:0016829
Spst1g00963 363 PRINTS Dihydrodipicolinate synthase signature 164 180 IPR002220 GO:0016829
Spst1g00963 363 PRINTS Dihydrodipicolinate synthase signature 132 150 IPR002220 GO:0016829
Spst1g00963 363 PRINTS Dihydrodipicolinate synthase signature 96 117 IPR002220 GO:0016829
Spst1g00963 363 PRINTS Dihydrodipicolinate synthase signature 187 204 IPR002220 GO:0016829
Spst1g00963 363 SMART DHDPS_2 62 339 IPR002220 GO:0016829
Spst1g00963 363 CDD DHDPS 65 335 IPR005263 GO:0008840|GO:0009089
Spst1g00963 363 Gene3D Aldolase class I 57 363 IPR013785 -
Spst1g00963 363 PANTHER DIHYDRODIPICOLINATE SYNTHASE 48 348 IPR002220 GO:0016829
Spst1g00963 363 NCBIfam 4-hydroxy-tetrahydrodipicolinate synthase 66 336 IPR005263 GO:0008840|GO:0009089
Spst1g00963 363 SUPERFAMILY Aldolase 66 334 - -
Spst1g00963 363 Pfam Dihydrodipicolinate synthetase family 64 336 IPR002220 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00963 Spst-Chr1 11846159 11850165 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00963 K01714 - gmx:100788930 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00963 1 11846159 11850165 Spst1g00963 1 11846159 11850165 ECH
Spst1g00963 1 11846159 11850165 Spst4g01687 4 56600084 56610489 PCT