Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00959 ATGGCTTCTTCGGAAGCCGATTCCCGTCTGAAGCAGGTGCTCGTTCCCGCGCTCGAGAAAATCATCAAAAACGCGTCATGGAGAAAGCACGCGAAGCTCGCGCACGAGTGCAAATCCGTGATCGAAACTCTAACCTCTGCCCCGAAGCCTCAATCGCCGGCCTCTAACGACGCAGCCGAGCCGGAGGCCTCGGTCCCTGGCCCGATCCACGATGGCGGTCCAGTGGAGTACTCGCTGGCGGAGTCGGAGTCGATCCTTCGACCGCTCATCGCCGCCGCGTCCTCCGGCGTCGTGAAGATCGCCGATCCCGCTGTCGACGCCGTGCAGCGGCTCATCGCGCACGGATTCCTCCGCGGCGAGGCGGACTCCGGCGGCGGCGCGCCTGAGGCAAAGATGCTCGCCAGCCTGATCGAGGCGGTATGCAAGTGCCACGAGTTCGGCGACGACGCCGTCGAATTGCTCGTGCTGAAGACGCTTTTATCAGCAGTGACCTCAATTTCCCTACGAATTCACGGTGATTGCTTGCTCTTGATTGTGAGAACTTGTTATGACATATATCTCGGTAGTAAGAATGTGGTGAATCAGACGACGGCGAAAGCGTCGTTGATTCAAATGTTAGTTATTGTCTTTAGGAGGATGGAGGCGGATTCGTCCACGGTTCCGGTTCAGCCTATTGTTGTGGCTGAATTGATGGATCCTGTGGACAAATCTGACGTGGATAACTCCATGACGCAGTCTGTGCAGGGTTTTATCACCAGGATTGTGCAGGACATTGATGGAGTTTTGAATCCAGTGACGCCGTCAACTTTGGGCGCACACGACGGTGCCTTTGAGACAACAGTGGCGGCAACAGTGGAAGCTGCGAATCCGGCGGATTTGTTGGATTCCACTGACGAAGACATGCTGGATGCCAAATATTGGGAGATCAGTATGTATAAGACCGCATTGGAGGGGAGGAAAGGGGAGCTGGTGGATGGGGAGCTGGTGGAGAGGGATGATGATCTGGAGATTCAGATTGGGAATAAGCTCAGGAGAGATGCCTTTTTGGTGTTCAGGGCACTTTGTAAGTTGTCCATGAAGACACCATCGAAGGAGGCATCCGTAGACCCTCAGTTGATGAAGGGGAAGATTGTGGCCTTGGAGTTGTTGAAGATCTTGCTGGAGAATGCTGGTGCTGTCTTCAGGACTAGCGAAAGTGTGCTTCGACAAGATACATACCTGCCACTGATGCTTCCATGCAAAGAAGTAGAAACTGAGAAAACGGCAGAATAG 1272 0.5425 MASSEADSRLKQVLVPALEKIIKNASWRKHAKLAHECKSVIETLTSAPKPQSPASNDAAEPEASVPGPIHDGGPVEYSLAESESILRPLIAAASSGVVKIADPAVDAVQRLIAHGFLRGEADSGGGAPEAKMLASLIEAVCKCHEFGDDAVELLVLKTLLSAVTSISLRIHGDCLLLIVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPVQPIVVAELMDPVDKSDVDNSMTQSVQGFITRIVQDIDGVLNPVTPSTLGAHDGAFETTVAATVEAANPADLLDSTDEDMLDAKYWEISMYKTALEGRKGELVDGELVERDDDLEIQIGNKLRRDAFLVFRALCKLSMKTPSKEASVDPQLMKGKIVALELLKILLENAGAVFRTSESVLRQDTYLPLMLPCKEVETEKTAE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00959 423 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 68 397 - -
Spst1g00959 423 Pfam Dimerisation and cyclophilin-binding domain of Mon2 6 216 IPR032629 -
Spst1g00959 423 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 344 401 IPR032691 -
Spst1g00959 423 MobiDBLite consensus disorder prediction 45 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00959 Spst-Chr1 11801977 11806131 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00959 K18442 - gmx:100789988 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00959 1 11801977 11806131 Spst1g00959 1 11801977 11806131 ECH
Spst1g00959 1 11801977 11806131 Spst4g01683 4 56547639 56562533 PCT