Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00922 ATGTCAGGCTTGTACAATCCCAACTTCTCTCCTGCTAGAGCTGCTTCCCCTCAGATTAGGAGCAACCCAGACGTGGACAGTCAGTACCTATCAGAGTTGCTGGCAGAACATCAGAAGCTTGGACCCTTCATGCAGGTGCTTCCCATATGCAGCCGCCTCCTAAATCAAGAAATATTAAGAGTCTCTGGAATGTTGTCCAACCAAGGTTTTGGTGACTTTGATAGACTGCGGCATAGAAGCCCTAGTCCTATGGCTTCTTCAAACCTTATGTCCAATGTCAGTGGAACAGGGTTGGGTGGATGGAATAGCCTTCAGCAGGAGAGATTATGTGGACCCCCTGGAATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCATTCACTGTTAAAAGGATATTGCGCCTGGAAATTCCAGTAGATACATATCCCAATTTCAATTTTGTTGGAAGACTTCTGGGGCCTAGAGGCAACTCTTTGAAACGTGTAGAAGCTACTACTGGTTGTCGTGTGTATATTAGAGGAAAAGGATCGATAAAGGATCCGGATAAGGAGGAGAAATTACGAGGAAGACCAGGCTATGAGCATCTCAATGAACCACTGCACATTTTGATTGAGGCTGATTTACCTGCTAATGTTGTTGAAATAAGGCTCAGGCAGGCTCAGGAAATCATTGAAGAACTGTTAAAGCCTGTGGAGGAGTCACAGGACTACATCAAGAGGCAGCAGTTGCGTGAACTTGCCATGCTGAATTCAAATTTCAGAGAAGAGAGTCCAGGGCCAAGTGGTAGTCTGTCCCCATTCAACTCTAGCGGAATGAAACGTGCAAAGACAGGTCGCTGA 846 0.4622 MSGLYNPNFSPARAASPQIRSNPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLQQERLCGPPGMTMDWQSAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVEIRLRQAQEIIEELLKPVEESQDYIKRQQLRELAMLNSNFREESPGPSGSLSPFNSSGMKRAKTGR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00922 281 MobiDBLite consensus disorder prediction 1 21 - -
Spst1g00922 281 Pfam Homodimerisation region of STAR domain protein 23 72 IPR032377 -
Spst1g00922 281 MobiDBLite consensus disorder prediction 256 281 - -
Spst1g00922 281 SMART kh_6 131 231 IPR004087 GO:0003676
Spst1g00922 281 Gene3D K Homology domain, type 1 19 262 IPR036612 GO:0003723
Spst1g00922 281 MobiDBLite consensus disorder prediction 255 281 - -
Spst1g00922 281 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 256 IPR036612 GO:0003723
Spst1g00922 281 PANTHER RNA-BINDING PROTEIN RELATED 19 269 IPR045071 -
Spst1g00922 281 Pfam KH domain 148 184 IPR004088 GO:0003723
Spst1g00922 281 ProSiteProfiles Type-1 KH domain profile. 148 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00922 Spst-Chr1 11444331 11455581 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00922 K14945 - gmx:100816420 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00922 1 11444331 11455581 Spst1g00922 1 11444331 11455581 ECH
Spst1g00922 1 11444331 11455581 Spst4g00855 4 36309224 36315251 PCT