Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00850 ATGGCCAGCGTGAAGGTTGCATGCTTGGTTCTGATGTGCATGGCTGTGGTGAGTGCACCAATGATGGTGCAGGCCATTACATGCGACGATGTGTCAAAGGCCCTGATACCGTGCCTACATTACCTGATGAATGGTGGAGAGGCTTCAGAAGGGTGCTGTAGCGGAGTGAAGAACATTCTGGGTGCTGCCGGCACCACCGTCGACAAACAAACTGTGTGCAAATGTCTCAAGGACGCTGCTGGTAAGTATAAAATCAATGACCAGTATGCACAGGAACTCCCTGGCGCCTGCAAGGTCAATGTCCCTTACGCCATCAGCCGCTCCACCAACTGTGCAAATCCATTTGAGAAATATAACATTACTATGGCAACTATGGCTAGCGTGAAGGTTGCATGCATGGTTGTGATGTGCATGGCTGTGGTGGGTGCACCCGTGATGGTGCAAGGTGTTTCATGCAATGATGTGACAATGAACCTTGCACCGTGCCTACCTTACCTGATTAATGGTGAAGCTGCTTCAGATGCGTGCTGTGCAGGAGTTAGGAGCACTCTGGGTGCTGCTGGAACAACCTCTGACAAACAAACCGTGTGCAACTGTCTTAAGGATGCTGCTAATAACTTTGGCATCAACGATGGTTACGCTCAGGCACTCCCTGGCCTCTGCAAGGTCAATGTCCCTTACAAGATCAGCCGCTCCACCAACTGTGCAAACATCAGGTTGTAG 723 0.5076 MASVKVACLVLMCMAVVSAPMMVQAITCDDVSKALIPCLHYLMNGGEASEGCCSGVKNILGAAGTTVDKQTVCKCLKDAAGKYKINDQYAQELPGACKVNVPYAISRSTNCANPFEKYNITMATMASVKVACMVVMCMAVVGAPVMVQGVSCNDVTMNLAPCLPYLINGEAASDACCAGVRSTLGAAGTTSDKQTVCNCLKDAANNFGINDGYAQALPGLCKVNVPYKISRSTNCANIRL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00850 240 PRINTS Plant phospholipid transfer protein signature 192 207 IPR000528 GO:0006869|GO:0008289
Spst1g00850 240 PRINTS Plant phospholipid transfer protein signature 151 167 IPR000528 GO:0006869|GO:0008289
Spst1g00850 240 PRINTS Plant phospholipid transfer protein signature 171 185 IPR000528 GO:0006869|GO:0008289
Spst1g00850 240 PRINTS Plant phospholipid transfer protein signature 208 225 IPR000528 GO:0006869|GO:0008289
Spst1g00850 240 PRINTS Plant phospholipid transfer protein signature 226 237 IPR000528 GO:0006869|GO:0008289
Spst1g00850 240 Pfam Protease inhibitor/seed storage/LTP family 152 235 IPR016140 -
Spst1g00850 240 Pfam Protease inhibitor/seed storage/LTP family 28 111 IPR016140 -
Spst1g00850 240 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 150 238 IPR036312 -
Spst1g00850 240 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 5 112 IPR000528 GO:0006869|GO:0008289
Spst1g00850 240 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 112 IPR036312 -
Spst1g00850 240 CDD nsLTP1 150 235 - -
Spst1g00850 240 ProSitePatterns Plant lipid transfer proteins signature. 217 238 IPR000528 GO:0006869|GO:0008289
Spst1g00850 240 CDD nsLTP1 26 111 - -
Spst1g00850 240 Gene3D - 149 239 IPR036312 -
Spst1g00850 240 Gene3D - 25 114 IPR036312 -
Spst1g00850 240 SMART aai_6 152 235 IPR016140 -
Spst1g00850 240 SMART aai_6 28 111 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00850 Spst-Chr1 10849461 10853728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00850 125 239 Acyl Lipid Metabolism Gene Families AT2G38540 44.068 5.42e-25 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00850 - - pvu:PHAVU_008G087100g 182.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00850 1 10849461 10853728 Spst4g00905 4 38214710 38215946 PCT