Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00578 ATGCAACATAGTGTTCACTTCCTTTTGTTGTCTCTTCAAGGTTTTCTGCCTGAAATGGAGTACGAGGACCGCTTCAGACAGAACCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTTGTATCCACTAAGCACTGGGATTGCAAAAGCATGTGGCCAAAATATTAAAGACTATATGGTGGAAAAGCTTGGCATAGAAAAAAGCAAAATTGATGACTTGTCCAACCTCCTCTACAAGAACTATGGAACAACTATGGCTGGTTTAAGGGCAATTGGATATGACTTTGACTATGATGAATATCACAGTTTTGTCCATGGAAGATTACCTTATGAGAACTTGAAACCAGACCCAGTTCTGAGGAATCTTTTGCTGAGCCTGCCCTATAGGAAACTAATCTTCACAAACTCAGACAAAGTCCATGCAGTTAAGGCACTTAGCAGACTTGGATTGGAGGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCCAACCACAAAACCACTGTCTCTGATGATGAAGATGACATTGAGTTTGTGGGGAGGTCAGGCACAACCAATCCAACCACAAAAAAAGATGCCAGTGGCTTACAAATCTTTGACATCATAACCCATTTTGCTCAACCCTATCCCAACACAGTTTTGCCTAAGACACCAATTATTTGCAAACCATCAGAAAATGCAATTGAATTTGCTCTGAAGATAGCCAACCTTAACCCACAAAGAACTCTGTTCTTTGAAGACAGTGTCCGCAACATACAAGCTGGAAAACGTTTAGGTCTTCACACTGTGCTGGTTGGAAAATCTCAGAGAATTAAAGGAGCAGATTATGCATTAGAGAGCATCCACAACCTTAGGGAAGCAGTGCCAGAACTATGGGAAGATGACATAAAATCAGAAGTTGCTTACCCTGGAAATCTTGCTGTGGAAACATCTGTGACTGCATAG 963 0.4081 MQHSVHFLLLSLQGFLPEMEYEDRFRQNQRPKYDCLLFDLDDTLYPLSTGIAKACGQNIKDYMVEKLGIEKSKIDDLSNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNSDKVHAVKALSRLGLEDCFEGIICFETLNPNHKTTVSDDEDDIEFVGRSGTTNPTTKKDASGLQIFDIITHFAQPYPNTVLPKTPIICKPSENAIEFALKIANLNPQRTLFFEDSVRNIQAGKRLGLHTVLVGKSQRIKGADYALESIHNLREAVPELWEDDIKSEVAYPGNLAVETSVTA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00578 320 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 28 299 - -
Spst1g00578 320 NCBIfam pyrimidine 5'-nucleotidase 34 271 IPR010237 -
Spst1g00578 320 SUPERFAMILY HAD-like 32 299 IPR036412 -
Spst1g00578 320 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 22 319 - -
Spst1g00578 320 NCBIfam HAD-IA family hydrolase 225 271 IPR006439 -
Spst1g00578 320 Gene3D - 99 298 IPR023214 -
Spst1g00578 320 CDD HAD_5NT 35 272 IPR010237 -
Spst1g00578 320 Pfam Haloacid dehalogenase-like hydrolase 192 271 IPR041492 -
Spst1g00578 320 SFLD C1.5.3: 5'-Nucleotidase Like 28 299 IPR010237 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00578 Spst-Chr1 7575100 7577015 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00578 K07025 - gmx:100795391 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00578 1 7575100 7577015 Spst1g00578 1 7575100 7577015 ECH
Spst1g00578 1 7575100 7577015 Spst4g01459 4 53063142 53064994 PCT