Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00458 ATGTATGCTGATCGGGTGGAGAGTGGACCTCGGAGATCAGTGAAGGAACGTCTTGATAGGAACTTCCTCACTGATTCTACTCGCCAACAGAAAGTCACCGGAAAGAGGCAGAGGCAAGATGACAAGTGGAAACATGATCTATATGCTGATGAACCCCGGCTCTATAATCGCAAGGTCACTGCTCAAGATCTTCGTTTGAAGCTTCAAAAGAAAGGTCTTCATCCTGGAGGTCAAACTGGAAAGAGTTCTGTTCCTGGTGAGAGGGATCTCCGTGAAAGGCTATCAGGGACAATGAATCCACAACCAAAAAACTATGACCCACCAAAGCCTAAAGTTGTTGCTAAACCTAGCAGTAAAAGTATTGATGTTGAGACTCCTGCAATACATATCAAAAGATCAGCGAATCCAATTCCTAAAAAGGTGTCCCGAAAGGCTGACGCTTCCTTGGATGAATTTTTGCTGTCACTGGGTCTCGAAAAGTATCTCATTAGTTTTCAGGCTGAAGAAGTTGATATGACTGCACTCAATCATATGACTGATGAAGATCTCAAGGCCATGGGTATTCCAATGGGACCAAGAAAGAAGATACTTTTAGCCTTAGAGTCAAAAGACTGA 615 0.4358 MYADRVESGPRRSVKERLDRNFLTDSTRQQKVTGKRQRQDDKWKHDLYADEPRLYNRKVTAQDLRLKLQKKGLHPGGQTGKSSVPGERDLRERLSGTMNPQPKNYDPPKPKVVAKPSSKSIDVETPAIHIKRSANPIPKKVSRKADASLDEFLLSLGLEKYLISFQAEEVDMTALNHMTDEDLKAMGIPMGPRKKILLALESKD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00458 204 SMART SAM_4 141 204 IPR001660 GO:0005515
Spst1g00458 204 CDD SAM_superfamily 148 201 - -
Spst1g00458 204 Gene3D - 147 204 IPR013761 -
Spst1g00458 204 Pfam SAM domain (Sterile alpha motif) 146 201 IPR001660 GO:0005515
Spst1g00458 204 FunFam Sterile alpha motif domain-containing protein 146 204 - -
Spst1g00458 204 ProSiteProfiles SAM domain profile. 144 198 IPR001660 GO:0005515
Spst1g00458 204 PANTHER SCP160 127 200 - -
Spst1g00458 204 MobiDBLite consensus disorder prediction 1 44 - -
Spst1g00458 204 MobiDBLite consensus disorder prediction 68 120 - -
Spst1g00458 204 SUPERFAMILY SAM/Pointed domain 145 201 IPR013761 -
Spst1g00458 204 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00458 Spst-Chr1 6020414 6025338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00458 37 203 Glycosyltransferase AT3G07170 60.947 2.85e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00458 - - gmx:100527300 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00458 1 6020414 6025338 Spst4g01504 4 53838357 53845800 PCT