Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01188 ATGACCGAGGTGCTTCATTTCTCTTCTTCTTCGTCGCCAACCGCTTCTTCCTCTGATGGCATTCTAATTGTCTCCGCCGAGCAAGAACCACCGCCACCCTCGTCTGCGGTGGTGGAGCGGTTAGCTACGGTCACCGACTGTGACGTGCGCGGGGTAACAGACAGGACACAGCAGGAGCTGTCGCTGCTGGCCATTCTTGTGACCCTTTTTAGGAAATCGTTGATTGCTTGCAAGAGTGAAGGGAGAGGGGACATCTGCGCCATGGATATTGGCTGGCCCACTAACGTGCGCCATGTTGCGCATGTCACCTTCGACAGGTTCAATGGCTTCTTGGGCTTGCCACGTGAGTTCGAACCTGAAGTCTCCACAAGACCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCATATGATACGAGAGGGAACAGTGTGCCAACTATACTTTTATTAATGCAAAGGCACTTGTATGCTCTCAGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGACAATACTCATGAGGAGTATGTTAGGGATCAATTAAACAGGGGATTGGTCCCAGAAGATGTTGATATACATTGTTTAGCTGGACTAATTAAGGCTTGGTTTAGGGAACTGCCTACTGGTGTTCTGGATTCTTTGTCACCAGAGCATGTAATGCAATGCCAAACTGAAGATGATTGTGCTGAACTGGTGAGGCAGCTACCTCACACCGAAGCTTCTCTCTTGGACTGGGCCATCAATCTAATGGCAGATGTTGTCCAAGAGGAACGCCTGAATAAGATGAATGCACGCAACATCGCCATGGTTTTTGCACCAAACATGACTCATATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCCTGAAGACACTTGTATTAAGGACACTGCGAGAAAGAAAGGATTGTGTGGTAGAATCATCCCCCGGATTTTGTTTAGAGCCTTCTGATGAGAACGGGGACCACAGTCTTTTGGAGGCCTGCCACCAAGACGATGATGTTGCCACTGAAAGTGAAGAATCTGGGGAAACCTTTGTTTTTGAGAAAACTGTATTAGAATGTTCCCCTGAATCTCTCCAAAACAAATACTCAACCGCAGGAGAATGTGGCAGTTTGAGAGGCTCTTCTGAGAATCTGGATTTTGAGGAGGAACTGTATTGTGAGTTTCCACCCAAAGGAAACATTGGAAAGAGTAAGAGTGGACAATCAAGTAGATCCAGTGCTAAAAAGGGGTCCAAAAAAACCAGAGGCTTACATGCAACTGTGGGTGTTGAGAAAAAGGGTATTAGCAATCTGAGCCGCATAGATTCAAGATCAGAGAGAATAGAAGCCTGGCGGTGA 1386 0.469 MTEVLHFSSSSSPTASSSDGILIVSAEQEPPPPSSAVVERLATVTDCDVRGVTDRTQQELSLLAILVTLFRKSLIACKSEGRGDICAMDIGWPTNVRHVAHVTFDRFNGFLGLPREFEPEVSTRPPSASATVFGVSTESMQLSYDTRGNSVPTILLLMQRHLYALRGLQAEGIFRINADNTHEEYVRDQLNRGLVPEDVDIHCLAGLIKAWFRELPTGVLDSLSPEHVMQCQTEDDCAELVRQLPHTEASLLDWAINLMADVVQEERLNKMNARNIAMVFAPNMTHMADPLTALMYAVQVMNFLKTLVLRTLRERKDCVVESSPGFCLEPSDENGDHSLLEACHQDDDVATESEESGETFVFEKTVLECSPESLQNKYSTAGECGSLRGSSENLDFEEELYCEFPPKGNIGKSKSGQSSRSSAKKGSKKTRGLHATVGVEKKGISNLSRIDSRSERIEAWR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01188 461 FunFam Rho GTPase-activating protein 5 120 313 - -
Spst11g01188 461 Gene3D CRIB domain 87 122 IPR036936 -
Spst11g01188 461 MobiDBLite consensus disorder prediction 405 440 - -
Spst11g01188 461 SUPERFAMILY GTPase activation domain, GAP 130 308 IPR008936 -
Spst11g01188 461 SMART RhoGAP_3 149 309 IPR000198 GO:0007165
Spst11g01188 461 CDD CRIB 88 128 - -
Spst11g01188 461 Gene3D Rho GTPase activation protein 123 316 IPR008936 -
Spst11g01188 461 Pfam RhoGAP domain 152 286 IPR000198 GO:0007165
Spst11g01188 461 Pfam P21-Rho-binding domain 89 116 IPR000095 -
Spst11g01188 461 ProSiteProfiles CRIB domain profile. 90 103 IPR000095 -
Spst11g01188 461 PANTHER MKIAA1688 PROTEIN 1 429 IPR044785 GO:0005096
Spst11g01188 461 SMART PBD_5 90 124 IPR000095 -
Spst11g01188 461 CDD RhoGAP 152 307 - -
Spst11g01188 461 ProSiteProfiles Rho GTPase-activating proteins domain profile. 135 320 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01188 Spst-Chr11 36207233 36210422 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01188 - K20642 gmx:100784019 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01188 11 36207233 36210422 Spst11g01188 11 36207233 36210422 ECH
Spst5g00650 5 5581867 5585539 Spst11g01188 11 36207233 36210422 PCT