Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01099 ATGGATTCTCCGTCGGTGCAGAAGGAGGTTGATGAACCTTTGGTGGTATCAGACGAATCATTGCAACAAAGACCACCTTCTTTTATTCAATCTTTCAGCTCGAGACATGGATCACATGGTGAACTTGAGCGATTACTCGCAGACAGTAGCGTCCCTTACATAAAGCGTGTTGGACCCGCGACATGGTTGGAGTTTAAGCTCCTGTTTCACCTTGCTGCTCCTGCTGTCATCGTCTACCTCATCAACTATATCATGTCGATGTCCACGCAAATCTTCTGCGGCCACCTCGGAAACCTCGAACTTGCTGCTGCTTCCCTCGGAAACACTGGCATCCAAATCTTCGCTTATGGCCTCATGTTGGGTATGGGAAGTGCCGTTGAGACGCTGTGCGGACAAGCATACGGAGCGAAGAAATTCCACATGTTAGGCATATACCTGCAACGATCCACGGTTCTACTCTCACTCACAGGCATTCTCTTAACCCTAATCTACGTCTTCTCAGAACCAATCCTCCTCATGCTAGGCGAGTCCCCGAGAATCTCGTCCGCAGCGGCGGTTTTCGTGTACGGGCTTATCCCTCAGATCTTCGCCTACGCCGTGAACTTCCCCATCCAGAAGTTCCTCCAGGCGCAGAGCATCGTGGCGCCGAGCGCGTACATTTCAAGCGCGACGCTGGTGCTCCACCTGGGGCTGAGTTGCTGGGCGGTGCAGAAGGTGGGGTTGGGTCTGCTGGGCGCGTCGCTGGTGCTGAGCTTCTCGTGGTGGGTGATCGTGTTGGGGCAATTCGCGTACATCGTGAAGAGTGAGAAGTGCAGGCAGACGTGGCGCGGGTTCACCTTCGAAGCGTTTACGGGTTTGCCGGAGTTTTTCAAACTCTCGGCGGCTTCGGCGGTGATGCTGTGTCTTGAGACGTGGTACTTCCAAATTCTGGTGCTGCTGGCGGGGTTGCTTCCTGAGCCCGAGTTGGCTCTTGATTCCCTTTCCATCTGTACCACACTGTCTGGATGGGTTTTCATGATCTCAGTTGGATTTAACGCAGCTGCAAGTGTGAGAGTGAGCAACGAGCTAGGAGCAAGAAATCCAAAATCAGCGTCATTTTCTGTGGTGGTGGTGACAGTGATATCATTCATAATATCGGTTGTTGCAGCGGCGGTGATTATGGCACTACGAGATGTGATTAGCTATGCTTTCACGGATGGTGCAGAGGTAGCTGCTGCTGTCTCAGATCTTTGTCCCCTTCTTGCCCTTTCCATTGTCCTCAACGGCATTCAGCCTGTTTTGTCTGGGGTGGCTGTTGGATGTGGATGGCAATCTTTTGTTGCCTACGTAAATGTTGGTTGTTACTATGGAGTTGGCATTCCATTGGGTTCGCTTCTCGGTTTCTACTTCAATTTTAATGCTAAGGGAATATGGTTGGGAATGCTTGGTGGCACCGTTTTGCAAACAGTAATCTTAATGTGGGTCACATTCCGAACTGATTGGAGTAAAGAGGTTGAGGAAGCAGAAAAGAGGTTGAACCAGTGGGAGGACATAAAGGAGCCACTCATCAAGAACTGA 1557 0.5106 MDSPSVQKEVDEPLVVSDESLQQRPPSFIQSFSSRHGSHGELERLLADSSVPYIKRVGPATWLEFKLLFHLAAPAVIVYLINYIMSMSTQIFCGHLGNLELAAASLGNTGIQIFAYGLMLGMGSAVETLCGQAYGAKKFHMLGIYLQRSTVLLSLTGILLTLIYVFSEPILLMLGESPRISSAAAVFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYISSATLVLHLGLSCWAVQKVGLGLLGASLVLSFSWWVIVLGQFAYIVKSEKCRQTWRGFTFEAFTGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPEPELALDSLSICTTLSGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTVISFIISVVAAAVIMALRDVISYAFTDGAEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQSFVAYVNVGCYYGVGIPLGSLLGFYFNFNAKGIWLGMLGGTVLQTVILMWVTFRTDWSKEVEEAEKRLNQWEDIKEPLIKN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01099 518 PANTHER MULTIDRUG RESISTANCE PROTEIN 60 494 - -
Spst11g01099 518 NCBIfam MATE family efflux transporter 74 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst11g01099 518 CDD MATE_eukaryotic 64 500 IPR045069 GO:0042910|GO:1990961
Spst11g01099 518 MobiDBLite consensus disorder prediction 1 20 - -
Spst11g01099 518 Pfam MatE 296 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst11g01099 518 Pfam MatE 74 232 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst11g01099 518 Coils Coil 491 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01099 Spst-Chr11 35335030 35340219 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01099 K03327 - gmx:100790437 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01099 11 35335030 35340219 Spst11g01099 11 35335030 35340219 ECH
Spst5g00743 5 6486663 6491108 Spst11g01099 11 35335030 35340219 PCT