Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01015 ATGCCGCAGCACCAACCAACTGTGATGGAACCTGCTCTCAGCTGCAACAGTGGCAATGGTAAAGGCAACTGTGACTATGATGTCATAAGCTGGTTTGAAGATGTATCTCAGAACGCTGGTTATGTTCAGACTCAGTTGCTGTGCCAGATTCTGAAGCAAAACTATGGGGTGGAATATCTCAAGAAATGGTTGGGGAACTACAATATCCTTGAGATGGACGCATGTGCATTAGAATCCCTTTTCTCTTCTGTGGTTCCCATTTCCTCCCATGCTGACTTTGAGCCATTTATCCAAAGGATTGCAGATGGGGACACTGGTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCTTAAGTTCTGGAACAACAGAGGGAAGGCAGAATGTCTATGCTAGGAGAGAGCTGAAGGAGACATTGAAATGA 426 0.4531 MPQHQPTVMEPALSCNSGNGKGNCDYDVISWFEDVSQNAGYVQTQLLCQILKQNYGVEYLKKWLGNYNILEMDACALESLFSSVVPISSHADFEPFIQRIADGDTGPLLTQQPITTLSLSSGTTEGRQNVYARRELKETLK 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01015 141 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 27 130 IPR004993 -
Spst11g01015 141 Pfam GH3 auxin-responsive promoter 31 129 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01015 Spst-Chr11 34337099 34338189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01015 27 130 EF-hand Containing Proteins AT1G23160 29.524 3.03e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01015 K14487 - gmx:100813472 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01015 11 34337099 34338189 Spst11g01015 11 34337099 34338189 ECH
Spst5g00845 5 7779664 7783528 Spst11g01015 11 34337099 34338189 PCT