Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01795 ATGGCCAAGGAAGCTTCTCTGTGCCTCTTGTTTCTCTCCTTTCTCATTATCTCCTGTTCTGGATCTCTTGTGGGTATTTCCTTCCGCGAGAGGGGAGACCCTTCGAAATTTGCTACAACCATATCATTCCTCCAGCAAAAAAACGTTTCCTCGTCTCAGATTCGACTTTTTGTTACAGATCATAGGATTTTGAGCACTCTCAGCAACTCCATCGTGCCAACTGATTTGTACTTGAACAAAAGTCAAGTTCAGAGTTTCATTACTTCAAAGCCCTCTGACCTAAAAGCTCGTCTACTTAACCTTCTCCCTCACTCAAACATCAAAAGCATCATTGCTAGCTGCGGCAGTGAGTGCTTAGCACAAAATGAGATGCCTTTGTTCTTGCATGCTCTGAAATCAGTTGGTTCAGTGCTCAGGGAGCTTCACATAGCGAGGGAGGTAAAAATCTCAGTAGCATTTTCACTTTCATTCTTAGAAAAGTTGAAAGCACCGCATGAAAACAGTATTCGTAAGATTCTTTCATTTATAAGGGAAATGAAATCCTTTGTCATGGTAGAAGACAGCATTGATGGAGAATTAAGCATGGAGAGTCACTCTGTTCATGCTATAATCAAACGAGCCACTCTTGCTGCTTCGATTCTTCCTTGCAAAGATGTTCCTATTGTTTTAACAATCAAGAGCGCAGTTGTCCCCACTTCAATGGAGTTAGCTCAATTTAGTGAGAGGGTATCCAAATATCTAGAAGCAAAGACTCATATTACAAAAAGAATAGCTGCATTATATGCAGAGGTGCATTCAACAGAAGATTTTGGAAGTAAAGGATTTAAAAGGGAAGAGGAAAAACTGTTTCCTGTGTCCCGCAGAGAGATGCTTAGTAAATCCCATAAAAGGAGAAGTCTAGATGATACAACAAGCCCAACAAACACAGTTTTCCCAACAAATCCAGCATCATCCATACCAATCATCACGCCCCCAGATACACCAACCATCATCACAGTTCCTGCCACAAATCCTGTCACAATTTCCCCTTCCAATCCTGCTGGAATGCCTGTGACAGTTCCTTCTACCACGCCTGTACCTTTTCCGCCCACAAATCCAGCCAATACACCAGTACCAGTGAGCAATCCAGCTACAACAACACCTGTAGGGATACCACCCCCAATAAACAACCCTGTGACATCTTATCCACCTCCATCAGGAAATGTTCCTGTCACAAATCCCCAACCTCAACCACCTCCTGCAAACACTAATGCTCCTGCCATTCAGGGGCAGAGTTGGTGTGTGGCAAAGCAAGTAGCTCCTGAAGCTTCTCTTCAAGCTGCACTAGATTATGCTTGTGGAATGGGTGGGTCAGATTGTTCTCAAATTCAGCAGGGTGGGAATTGTTACAGTCCAGTTACTTTGCAGAACCATGCTTCTTTTGCCTTCAACAGCTACTACCAAAAGAATCCAGCTCCAACAAGCTGCGACTTTGGAGGGACTGCCACCTTAGTTAACACAAATCCAAGCTCGGGTTCATGCATTTTCTCCTCCTCATCATCAACAACAACGCCAAAGTCATCATCCCCAACACCACCTACACAATCAAGTCCAACACTACCACCACCAAGTCCAGTAACACCTGTATCATTAATTCCAACAGCACCACCAACAACACCAGTAACTGGTCCTTTTGGATATGGTACACCACCTTCAGTGTTAAATTCAAGCAACCCCGCGTCAGGTACAATGCCAGATTTTGGGTCTGAAAGTCCTCCTGTTGTAAATACAACGTCAACCTCTCATTCTCGGAGTTTGAGACCTTCTGTTGCCTGCATTGTTCTGATGGTATCATTTGTCACTACGAGACTCAGTATGCACCCATAG 1866 0.4394 MAKEASLCLLFLSFLIISCSGSLVGISFRERGDPSKFATTISFLQQKNVSSSQIRLFVTDHRILSTLSNSIVPTDLYLNKSQVQSFITSKPSDLKARLLNLLPHSNIKSIIASCGSECLAQNEMPLFLHALKSVGSVLRELHIAREVKISVAFSLSFLEKLKAPHENSIRKILSFIREMKSFVMVEDSIDGELSMESHSVHAIIKRATLAASILPCKDVPIVLTIKSAVVPTSMELAQFSERVSKYLEAKTHITKRIAALYAEVHSTEDFGSKGFKREEEKLFPVSRREMLSKSHKRRSLDDTTSPTNTVFPTNPASSIPIITPPDTPTIITVPATNPVTISPSNPAGMPVTVPSTTPVPFPPTNPANTPVPVSNPATTTPVGIPPPINNPVTSYPPPSGNVPVTNPQPQPPPANTNAPAIQGQSWCVAKQVAPEASLQAALDYACGMGGSDCSQIQQGGNCYSPVTLQNHASFAFNSYYQKNPAPTSCDFGGTATLVNTNPSSGSCIFSSSSSTTTPKSSSPTPPTQSSPTLPPPSPVTPVSLIPTAPPTTPVTGPFGYGTPPSVLNSSNPASGTMPDFGSESPPVVNTTSTSHSRSLRPSVACIVLMVSFVTTRLSMHP 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01795 621 MobiDBLite consensus disorder prediction 303 317 - -
Spst10g01795 621 Gene3D Glycosidases 24 189 - -
Spst10g01795 621 MobiDBLite consensus disorder prediction 380 416 - -
Spst10g01795 621 PRINTS Proline rich extensin signature 365 386 - -
Spst10g01795 621 PRINTS Proline rich extensin signature 351 363 - -
Spst10g01795 621 PRINTS Proline rich extensin signature 514 539 - -
Spst10g01795 621 PRINTS Proline rich extensin signature 396 412 - -
Spst10g01795 621 PRINTS Proline rich extensin signature 304 316 - -
Spst10g01795 621 PRINTS Proline rich extensin signature 320 336 - -
Spst10g01795 621 PANTHER BETA-1,3 GLUCANASE 421 520 IPR044788 -
Spst10g01795 621 MobiDBLite consensus disorder prediction 507 523 - -
Spst10g01795 621 MobiDBLite consensus disorder prediction 562 598 - -
Spst10g01795 621 MobiDBLite consensus disorder prediction 507 598 - -
Spst10g01795 621 Pfam X8 domain 426 496 IPR012946 -
Spst10g01795 621 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Spst10g01795 621 SMART X8_cls 425 509 IPR012946 -
Spst10g01795 621 MobiDBLite consensus disorder prediction 288 302 - -
Spst10g01795 621 Gene3D - 420 523 - -
Spst10g01795 621 FunFam Glucan endo-1,3-beta-glucosidase 4 420 513 - -
Spst10g01795 621 MobiDBLite consensus disorder prediction 288 322 - -
Spst10g01795 621 MobiDBLite consensus disorder prediction 524 557 - -
Spst10g01795 621 MobiDBLite consensus disorder prediction 380 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01795 Spst-Chr10 18326465 18328957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01795 399 509 Glycoside Hydrolase AT2G05790 51.754 2.60e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01795 - - gmx:100794910 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01795 10 18326465 18328957 Spst10g01795 10 18326465 18328957 ECH
Spst1g02364 1 32237881 32249457 Spst10g01795 10 18326465 18328957 PCT