Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01781 ATGGGGAGATTTGAACTAGCCCAGAAAGCAGTTGCTTTGGCTGAGAAAAGACTGCCAGTTGATTATTGGCCTGAATACTACGATACACGCACTGGAAAATTTATTGGAAAACAAGCCCGGATGTATCAAACATGGACCATAGCTGGTTTCCTTACATCCAAGATGCTTTTGAAAGATCCTGAGATGGCATCCAGATTATTTTGGGAGGAGGATTATGAACTTCTAGACATATGTGTTTGTGGACTTAGCAAGACTGGCAGGAAAAGTATTCCTCTCGGTAAGGGCTCACTCCAAAAGGCACGCGTGCTGTTCGACGAAATGCCTCACAGAAATGTGGTCACCTGGACGGCCATGATCACAGGAAACAACTCGTGCAACCACTATAAGAGTGCATGGAATGTGTTTCCTCAAATGCTCAGAGATGGGGCGCAGCCCAACGATTTCACCATATCCGCTGTTTTGAAGGCCTGTAAGGGTTTGAAAGCTCTTTTATGTGGCCAATTAGCTCATGCTTTGGCCATCAAGGTTGGTGTCCAAGGATCATCCATATATGTTGATAACGCACTCATGGATATGTATGCCACTTGCTGTGCTACCATGAACCATGCAAAGATGGTTTTTGAGGATATCACAACTAAAACTGATGTCTGCTGGACTACTTTTATCACTGGGTACACTCATAGAGGAGATGCCTATGGTGGTCTTCGAGTTTTCTGTCAAATGTTTCTGGAGGAAGGAGCACTGAGTCCCTTTAGCTTCTCAATTGCAGCTAGAGCTTGTGCCTCAATTGGTTGGTGTTTTTTGGGCAAGCAAGTACATGCTGCAGTGGTTAAGCATGGATTTGAGTCCAACCTTCCTGTCAAGAATTCCATACTGGACATGTATTGCAAGTGTCATTCTGTTTCTGGTGCAAAACAATTATTCTCTGAAATGAGTCATAAAGATACCATCACATGGAATACCTTGATAGCTGGATTTGAAGCATTGGATTCCAGAGTCTCTCTCTGCATATTTTCACAAATGGTCTCAGAAGGTTTTAGTCCAGATTGCTTCTCCTTTACTAGTGTGCTAGGTGCATGTGCAAACTTAGCAGTTCTGTATTGTGGGCAACAGCTTCATGGTGTAATCGTTCATAAAGGCCTTGATAACAACTTAGAAATATCCAATGCCCTTATTTATATGTATGCCAAGGGTGGAAATATAGCGTATTCACATAAAATATTTAGCAAAATGCCGTGCACAAATTTGGTCTCATGGACTTCAATGATGATTGGATATGGGGATCATGGATATGGTAAAGAGGCGGTTGAGCTATTCGATGAAATGGTAGGATTAGGTATTAAACCAGATAGGATGATGTTTATGGCAATTCTAAGTGCATGTAGCCATGCTGGACTAGTGGAAGAAGGGCTGAGATATTTTAGATTAATGACCAACTGTTATCATATAGCACCAGATATAGTGATATATGGATGTGTGGTGGATTTGCTAGGTCGAGTTGGAAAAGTGAAGGAAGCTTATCAACTAATAGAGAGTATGCCATTTGAGCCAGATGAGTCTATCTGGGCGACCCTTCTTGGAGCTTGTAAATTGCATAAACAATCTAGAGTGGCCAAATTAGCAGCTTTGAGGGCTTTGGATATGAAGCCAATTAAGGCAGGAACTTATGCCTTGTTATCAAATATTTATGCAGCTGAAGGCGACTGGGATGATTTTGCTAGCTTAAAAAAACTGAGGAGAAGTATTAAAAATAAAAGTGACTCGGGAAGGAGCTGGATTGAATTGAAAGACCAGGTCTGCAGTTTTGTTGTTGGAGATAGATTTGTTTCTTCCAATAAAGAGGTGTGTGAAGTTCTGAAATTGTTGATTTTGCATATTAAAGATGTTGATATGGACAATGTACATGATCTGGAAGATAAGAATGATCACTTGAATGGAAGCTGA 1944 0.412 MGRFELAQKAVALAEKRLPVDYWPEYYDTRTGKFIGKQARMYQTWTIAGFLTSKMLLKDPEMASRLFWEEDYELLDICVCGLSKTGRKSIPLGKGSLQKARVLFDEMPHRNVVTWTAMITGNNSCNHYKSAWNVFPQMLRDGAQPNDFTISAVLKACKGLKALLCGQLAHALAIKVGVQGSSIYVDNALMDMYATCCATMNHAKMVFEDITTKTDVCWTTFITGYTHRGDAYGGLRVFCQMFLEEGALSPFSFSIAARACASIGWCFLGKQVHAAVVKHGFESNLPVKNSILDMYCKCHSVSGAKQLFSEMSHKDTITWNTLIAGFEALDSRVSLCIFSQMVSEGFSPDCFSFTSVLGACANLAVLYCGQQLHGVIVHKGLDNNLEISNALIYMYAKGGNIAYSHKIFSKMPCTNLVSWTSMMIGYGDHGYGKEAVELFDEMVGLGIKPDRMMFMAILSACSHAGLVEEGLRYFRLMTNCYHIAPDIVIYGCVVDLLGRVGKVKEAYQLIESMPFEPDESIWATLLGACKLHKQSRVAKLAALRALDMKPIKAGTYALLSNIYAAEGDWDDFASLKKLRRSIKNKSDSGRSWIELKDQVCSFVVGDRFVSSNKEVCEVLKLLILHIKDVDMDNVHDLEDKNDHLNGS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01781 647 Pfam PPR repeat family 110 157 IPR002885 -
Spst10g01781 647 Pfam Alkaline and neutral invertase 2 60 IPR024746 GO:0033926
Spst10g01781 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Spst10g01781 647 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 95 629 IPR046960 GO:0003723|GO:0009451
Spst10g01781 647 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 386 612 - -
Spst10g01781 647 Pfam PPR repeat 417 447 IPR002885 -
Spst10g01781 647 Pfam PPR repeat 488 513 IPR002885 -
Spst10g01781 647 Pfam PPR repeat 289 313 IPR002885 -
Spst10g01781 647 Pfam PPR repeat 216 241 IPR002885 -
Spst10g01781 647 Pfam PPR repeat 453 478 IPR002885 -
Spst10g01781 647 Gene3D Tetratricopeptide repeat domain 243 362 IPR011990 GO:0005515
Spst10g01781 647 Gene3D Tetratricopeptide repeat domain 433 620 IPR011990 GO:0005515
Spst10g01781 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Spst10g01781 647 Pfam E motif 535 594 IPR046848 -
Spst10g01781 647 NCBIfam pentatricopeptide repeat 417 450 IPR002885 -
Spst10g01781 647 Gene3D Tetratricopeptide repeat domain 58 164 IPR011990 GO:0005515
Spst10g01781 647 FunFam Putative pentatricopeptide repeat-containing protein At1g56570 267 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01781 Spst-Chr10 18209544 18212690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01781 76 627 Glycoside Hydrolase AT3G49170 35.231 6.49e-110 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01781 - - lang:109346227 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01781 10 18209544 18212690 Spst10g01781 10 18209544 18212690 ECH
Spst1g02341 1 32038520 32041592 Spst10g01781 10 18209544 18212690 ECH
Spst1g02341 1 32038520 32041592 Spst10g01781 10 18209544 18212690 PCT