Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01274 ATGAAAGGCAAAGTAAAGAGCTCCAAACTGAAGTTGGGCATACCAACATTTTTTTTCCTTTGCGCTATTTTTTTCTTTGCTGGCTTCTTTGTGTCTCCTCTCCTCTTTCAGGATTTGGATGATGTGGGATCAAAGTCAAGAATACTCCATGAATCGGTGAAGAAAGTACATGAACCTCTTGAACATGGTGAATCCGGGGAGTTCTGTTTTGATTCAATCCCATTTCAGATTTTAAGTTGGACACCACGGGCGGTTTACTTTCCAAACTTCACAAGTGTGGAAGCATGTCAGCAAATAATTGAATTGGCAAAGCCAAAACTTGAACCATCAAAACTGGCTTTGCGAAAAGGAGAAACTGCCGAGAGCACAAAAGACACTAGAACAAGTTCAGGCACATTTATCAGTGCATCAGAAGACAAATCTGGCATCTTAGACATGGTAGAGATGAAAATTGCTAAAGTTACATTGCTTCCAAGGAGCCATGGGGAAAAATTCAATATATTGAAGTATGAGGTTGGCCAGAAATATGATTCTCATTATGATGCGTTCAACCCAGATGAATACGGCACTGTTAAGAGCCAAAGGATTGCTTCCTTCCTGTTATACCTATCAAATGTTGAAGCAGGGGGGGAAACAATGTTCCCTTATGAGGGTGGTTTGAACCTTGATACGGATTATGATTACCGAAAATGCATTGGATTGAAGGTGAAGCCACGGCAGGGAGATGGACTTTTATTTTATTCTTTGTTACCAAACGGGAAAATTGATAAGACTTCTCTCCATGGAAGTTGTCCAGTGATCAAGGGAGAGAAATGGGTGGCAACAAAATGGATTGATGATAAAGAGCAATAG 852 0.4049 MKGKVKSSKLKLGIPTFFFLCAIFFFAGFFVSPLLFQDLDDVGSKSRILHESVKKVHEPLEHGESGEFCFDSIPFQILSWTPRAVYFPNFTSVEACQQIIELAKPKLEPSKLALRKGETAESTKDTRTSSGTFISASEDKSGILDMVEMKIAKVTLLPRSHGEKFNILKYEVGQKYDSHYDAFNPDEYGTVKSQRIASFLLYLSNVEAGGETMFPYEGGLNLDTDYDYRKCIGLKVKPRQGDGLLFYSLLPNGKIDKTSLHGSCPVIKGEKWVATKWIDDKEQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01274 283 SMART p4hc 82 279 IPR006620 GO:0005506|GO:0016705|GO:0031418
Spst10g01274 283 FunFam Prolyl 4-hydroxylase 4 74 280 - -
Spst10g01274 283 Pfam 2OG-Fe(II) oxygenase superfamily 166 278 IPR044862 -
Spst10g01274 283 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 159 280 IPR005123 -
Spst10g01274 283 Gene3D q2cbj1_9rhob like domain 75 279 - -
Spst10g01274 283 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 57 277 IPR045054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01274 Spst-Chr10 13442470 13444881 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01274 K00472 - gmx:100811068 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01274 10 13442470 13444881 Spst10g01274 10 13442470 13444881 ECH
Spst2g00615 2 5083380 5088856 Spst10g01274 10 13442470 13444881 PCT