Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01014 ATGGGGGCTGGTGTTTCTTCACCAAATAAAGCTGAAAATGAAGAAGGGTCTATTTCTCAATCATCAAGACCTGGTCTTGGTGATATCCCAGAGAGTTGCATCTCTTCCTTGTTCATGAATCTTGATCCACCCGATATATGCAAATTGGCAAGAGTGAATAGGGCCTTTCACCGAGCTTCCTCGGCTGATTTTGTGTGGGAATCAAAGTTGCCACCAAGTTACAAGTTTCTTGCTGATAAAGTTCTTGGTGAAGAAAATATTGCTACTATGACCAAGAAAGAGATTTATGCAAAACTCAGCCTACCCAATCGTTTTGATGGTGGCGCCAAAGAAGTTTGGTTGGACAAATGTAGTGGACAAGTTTGTTTGTTCATGTCATCCAAGTCCTTGAAGATTACAGGAATAGATGACAGAAGATACTGGAATTATATCCCAACTGAAGAATCCAGGTTCAAGAGTGTTGCATATCTGCAACAAATGTGGTGGGTTGAAGTGGTAGGGGAGCTAGAGTTTGAATTCCCTGCGGGGAGTTACAGCTTAGTTTTCAGACTCCAATTGGGCAAAGCCTCGAAGAGATTGGGCCGGCGCGTGTGCAACGTTGATCAGGTTCATGGTTGGGACATCAAGCCCGTCCGATTCCAACTATCTACATCCGACGGCCAGCATTCACTCTCGGAGTGTTACTTGCGTGGGCCTGGGAAATGGGTCTACTATCATGTCGGAGATTTCGTTGTCGAAAAGCCCAATGAGCTAACAAATATCAAGTTCTCCTTGGCCCAAATAGACTGCACTCACACCAAAGGTGGGCTCTGCATAGACAGTGCCATTATCTGCCCAACGGAGTTTAACGAAAGACTCAAACAAAGTTAG 870 0.4483 MGAGVSSPNKAENEEGSISQSSRPGLGDIPESCISSLFMNLDPPDICKLARVNRAFHRASSADFVWESKLPPSYKFLADKVLGEENIATMTKKEIYAKLSLPNRFDGGAKEVWLDKCSGQVCLFMSSKSLKITGIDDRRYWNYIPTEESRFKSVAYLQQMWWVEVVGELEFEFPAGSYSLVFRLQLGKASKRLGRRVCNVDQVHGWDIKPVRFQLSTSDGQHSLSECYLRGPGKWVYYHVGDFVVEKPNELTNIKFSLAQIDCTHTKGGLCIDSAIICPTEFNERLKQS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01014 289 MobiDBLite consensus disorder prediction 1 27 - -
Spst10g01014 289 Pfam Phloem protein 2 121 279 IPR025886 -
Spst10g01014 289 PANTHER F-BOX PROTEIN PP2-A15 17 287 - -
Spst10g01014 289 ProSiteProfiles F-box domain profile. 23 69 IPR001810 GO:0005515
Spst10g01014 289 MobiDBLite consensus disorder prediction 10 26 - -
Spst10g01014 289 SUPERFAMILY F-box domain 19 81 IPR036047 GO:0005515
Spst10g01014 289 CDD F-box_AtSKIP3-like 26 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01014 Spst-Chr10 10790579 10793305 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01014 - - gmx:100795463 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01756 4 57628559 57630279 Spst10g01014 10 10790579 10793305 ECH
Spst10g01014 10 10790579 10793305 Spst10g01014 10 10790579 10793305 ECH
Spst4g01756 4 57628559 57630279 Spst10g01014 10 10790579 10793305 PCT