Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07459 ATGGCCCAGTTTACCCCCTCAGGTAAATCTGATGATCTTACAAAAGAAGGCTGCAAGGAAACAAGTGGACTGGTTGTCTGTTTTGGTGAATTGTTAATAGACTTTGTACCAACAGTGGGTGGAGTGTCACTAGCTGAAGCACCTGCTTTCAAGAAAGCTCCTGGTGGTGCTCCTGCCAATGTAGCTGTTGGCATCTCTAGGCTGGGGGGTTCATCTGCATTTTTAGGCAAGGTTGGAGCAGATGAATTTGGGTATATGTTGGCTGATATTTTAAAGCAGAACAATGTTGGGACATCTGGCATGCGATTTGATTCTAATGCAAGAACTGCATTAGCTTTTGTTACTCTTAGAGCTGATGGCGAGCGTGAGTTCTTGTTTTTCCGAAATCCTAGTGCTGATATGCTTCTTTGTGAGTCAGAGCTTGATCAAAATCTCATAAAGCAGGCAAAAATATTCCATTATGGTTCTATCAGCTTGATTTCTGAACCATGCAAGTCAGCTCATCTTGCTGCTTTGAGAATTGCTAAAGACTCTGGTTGCATTCTCTCATATGATCCGAATTTGAGATTGGCACTATGGCCATCAGCTGAGGCTGCTCAGAAAGGCATAATGAGCATATGGGACCAAGCTGATATCATAAAGATAAGTGAAGATGAGATTGCATTTTTGACTGGTGGTGATGATCCTTATGATGATAATGTTGTATTAAATAAGCTTTTTCACCCTAATCTCAAGCTTTTAATTGTTACTGAAGGGTCAGAGGGTTGTAGATATTACACCAAGGTAAGCTTGCCAAAACAAATTTCTGTGCAGGAATTTAAGGGCAAGGTTGCAGGTGTTAAAGTTAAAGCTGTTGACACAACTGGCGCTGGTGATGCATTTGTTGGTGGGTTAATCTACAGCATAGCTTCTGACCTAAGTATTTTACAGGATGAGAAGCGTCTCCAAGAAGCTCTATATTTTGCCAATGTATGTGGTGCCATTACTGTAACAGAGAGAGGGGCAATTCCTGCACTACCTACAAAAGAAGCTGTTCTGCAATTTGGAGCAATATAG 1056 0.4157 MAQFTPSGKSDDLTKEGCKETSGLVVCFGELLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFLGKVGADEFGYMLADILKQNNVGTSGMRFDSNARTALAFVTLRADGEREFLFFRNPSADMLLCESELDQNLIKQAKIFHYGSISLISEPCKSAHLAALRIAKDSGCILSYDPNLRLALWPSAEAAQKGIMSIWDQADIIKISEDEIAFLTGGDDPYDDNVVLNKLFHPNLKLLIVTEGSEGCRYYTKVSLPKQISVQEFKGKVAGVKVKAVDTTGAGDAFVGGLIYSIASDLSILQDEKRLQEALYFANVCGAITVTERGAIPALPTKEAVLQFGAI. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07459 351 PANTHER HEXOKINASE FAMILY MEMBER 24 347 - -
Seca8g07459 351 PRINTS Ribokinase signature 205 220 IPR002139 GO:0016301
Seca8g07459 351 PRINTS Ribokinase signature 247 258 IPR002139 GO:0016301
Seca8g07459 351 PRINTS Ribokinase signature 50 69 IPR002139 GO:0016301
Seca8g07459 351 CDD bac_FRK 24 336 - -
Seca8g07459 351 SUPERFAMILY Ribokinase-like 25 348 IPR029056 -
Seca8g07459 351 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 286 299 IPR002173 GO:0016301
Seca8g07459 351 Gene3D - 22 350 IPR029056 -
Seca8g07459 351 Pfam pfkB family carbohydrate kinase 24 341 IPR011611 -
Seca8g07459 351 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 55 79 IPR002173 GO:0016301
Seca8g07459 351 FunFam Probable fructokinase-2 22 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07459 Seca-Chr8 171616238 171620397 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07459 K00847 - gmx:100818404 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04173 10 93234259 93238891 Seca8g07459 8 171616238 171620397 ECH
Seca8g07459 8 171616238 171620397 Seca8g07459 8 171616238 171620397 ECH
Seca10g04173 10 93234259 93238891 Seca8g07459 8 171616238 171620397 PCT