Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04173 ATGGCTCATTCTACCCCATCAGGTAAATCCAATGATCTCAAAAAAGAAGACTGCATGGAAACAAATTCACTGGTTGTTTGCTTTGGGGAAATGTTAATAGACTTTGTGCCAACGGTGGGAGGAGTGTCACTGGCTGAAGCACCGGCTTTTAAGAAAGCTCCTGGTGGAGCTCCTGCCAATGTGGCTGTTGGTATCTCTAGACTGGGGGGTTCATCTGCTTTTGTAGGCAAGGTTGGAGCAGATGAATTTGGGTACATGTTGGCTGACATTCTAAAGCAGAACAATGTTGAGACATCTGGCATGCGGTTTGACTCTAATGCAAGAACTGCTTTAGCTTTTGTTACACTAAGAGCTGATGGTGAGCGTGAGTTCTTGTTTTTCCGGAATCCAAGTGCTGATATGCTTCTTCATGAGTCAGAACTTGATAAAAATCTCATAAAGCAGGCTAAAATTTTCCATTATGGCTCCATCAGCTTGATTGATGAGCCATGCAAGTCAGCTCACCTTTCTGCTATGAGCATTGCCAAAAGCTCTGGTTGCATTCTCTCTTATGATCCTAATTTGAGATTGGCACTATGGCCATCAGCAGATGCTGCTAGAAAAGGCATAATGGATATATGGGATCAAGCTGATGTCATAAAGATAAGTGAGGATGAGATCACATTTTTGACTGGAGGTGATGATCCATATGATGATAATGTTGTTTTGAAGAAACTTTTTCATCCTAATCTCAAGCTTTTAATCGTTACTGAAGGGTCAGAGGGTTGTAGATATTATACCAAGGTATGCATACCAAAGCCATATCACCATGGTGTCACATGTCTCACTAGAAGCACAGTTTCTCATTCATCTTTGCCTTGTTTTATGTGGTTTTGTACACTGCAGCAATTTAAGGGCAGAGTTGCAGGTGTTAAAGTTAAACCTGTTGACACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATTCTATACTGTTTAGCTTCTGACCAAAGTATTCTTCAGGATGAGAAACGTCTCAGAAAGGCTTTATATTTTGCTAATGTATGTGGTGCCATCACTGTAACTGAGAGAGGTGCAATTCCTGCACTTCCTACAAAAGAAGCTGTCTTGCAGTTCTTACTAGAAGCAGCTGTAACACAACAGAACTGA 1149 0.4151 MAHSTPSGKSNDLKKEDCMETNSLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKVGADEFGYMLADILKQNNVETSGMRFDSNARTALAFVTLRADGEREFLFFRNPSADMLLHESELDKNLIKQAKIFHYGSISLIDEPCKSAHLSAMSIAKSSGCILSYDPNLRLALWPSADAARKGIMDIWDQADVIKISEDEITFLTGGDDPYDDNVVLKKLFHPNLKLLIVTEGSEGCRYYTKVCIPKPYHHGVTCLTRSTVSHSSLPCFMWFCTLQQFKGRVAGVKVKPVDTTGAGDAFVSGILYCLASDQSILQDEKRLRKALYFANVCGAITVTERGAIPALPTKEAVLQFLLEAAVTQQN. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04173 382 Pfam pfkB family carbohydrate kinase 24 365 IPR011611 -
Seca10g04173 382 Gene3D - 26 261 IPR029056 -
Seca10g04173 382 CDD bac_FRK 24 360 - -
Seca10g04173 382 FunFam Probable fructokinase-2 22 283 - -
Seca10g04173 382 Gene3D - 31 126 IPR023314 -
Seca10g04173 382 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 310 323 IPR002173 GO:0016301
Seca10g04173 382 PANTHER HEXOKINASE FAMILY MEMBER 24 373 - -
Seca10g04173 382 SUPERFAMILY Ribokinase-like 25 373 IPR029056 -
Seca10g04173 382 Gene3D - 283 381 IPR029056 -
Seca10g04173 382 PRINTS Ribokinase signature 205 220 IPR002139 GO:0016301
Seca10g04173 382 PRINTS Ribokinase signature 247 258 IPR002139 GO:0016301
Seca10g04173 382 PRINTS Ribokinase signature 50 69 IPR002139 GO:0016301
Seca10g04173 382 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 55 79 IPR002173 GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04173 Seca-Chr10 93234259 93238891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04173 K00847 - gmx:100778752 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04173 10 93234259 93238891 Seca8g07459 8 171616238 171620397 ECH
Seca10g04173 10 93234259 93238891 Seca10g04173 10 93234259 93238891 ECH
Seca10g04173 10 93234259 93238891 Seca8g07459 8 171616238 171620397 PCT